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Scale-aware dense residual retinal vessel segmentation network with multi-output weighted loss

BACKGROUND: Retinal vessel segmentation provides an important basis for determining the geometric characteristics of retinal vessels and the diagnosis of related diseases. The retinal vessels are mainly composed of coarse vessels and fine vessels, and the vessels have the problem of uneven distribut...

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Autores principales: Wu, Jiwei, Xuan, Shibin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10387208/
https://www.ncbi.nlm.nih.gov/pubmed/37516821
http://dx.doi.org/10.1186/s12880-023-01061-y
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author Wu, Jiwei
Xuan, Shibin
author_facet Wu, Jiwei
Xuan, Shibin
author_sort Wu, Jiwei
collection PubMed
description BACKGROUND: Retinal vessel segmentation provides an important basis for determining the geometric characteristics of retinal vessels and the diagnosis of related diseases. The retinal vessels are mainly composed of coarse vessels and fine vessels, and the vessels have the problem of uneven distribution of coarse and fine vessels. At present, the common retinal blood vessel segmentation network based on deep learning can easily extract coarse vessels, but it ignores the more difficult to extract fine vessels. METHODS: Scale-aware dense residual model, multi-output weighted loss and attention mechanism are proposed and incorporated into the U-shape network. The model is proposed to extract image features through residual module, and using a multi-scale feature aggregation method to extract the deep information of the network after the last encoder layer, and upsampling output at each decoder layer, compare the output results of each decoder layer with the ground truth separately to obtain multiple output losses, and the last layer of the decoder layers is used as the final prediction output. RESULT: The proposed network is tested on DRIVE and STARE. The evaluation indicators used in this paper are dice, accuracy, mIoU and recall rate. On the DRIVE dataset, the four indicators are respectively 80.40%, 96.67%, 82.14% and 88.10%; on the STARE dataset, the four indicators are respectively 83.41%, 97.39%, 84.38% and 88.84%. CONCLUSION: The experiment result proves that the network in this paper has better performance, can extract more continuous fine vessels, and reduces the problem of missing segmentation and false segmentation to a certain extent.
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spelling pubmed-103872082023-07-31 Scale-aware dense residual retinal vessel segmentation network with multi-output weighted loss Wu, Jiwei Xuan, Shibin BMC Med Imaging Research BACKGROUND: Retinal vessel segmentation provides an important basis for determining the geometric characteristics of retinal vessels and the diagnosis of related diseases. The retinal vessels are mainly composed of coarse vessels and fine vessels, and the vessels have the problem of uneven distribution of coarse and fine vessels. At present, the common retinal blood vessel segmentation network based on deep learning can easily extract coarse vessels, but it ignores the more difficult to extract fine vessels. METHODS: Scale-aware dense residual model, multi-output weighted loss and attention mechanism are proposed and incorporated into the U-shape network. The model is proposed to extract image features through residual module, and using a multi-scale feature aggregation method to extract the deep information of the network after the last encoder layer, and upsampling output at each decoder layer, compare the output results of each decoder layer with the ground truth separately to obtain multiple output losses, and the last layer of the decoder layers is used as the final prediction output. RESULT: The proposed network is tested on DRIVE and STARE. The evaluation indicators used in this paper are dice, accuracy, mIoU and recall rate. On the DRIVE dataset, the four indicators are respectively 80.40%, 96.67%, 82.14% and 88.10%; on the STARE dataset, the four indicators are respectively 83.41%, 97.39%, 84.38% and 88.84%. CONCLUSION: The experiment result proves that the network in this paper has better performance, can extract more continuous fine vessels, and reduces the problem of missing segmentation and false segmentation to a certain extent. BioMed Central 2023-07-29 /pmc/articles/PMC10387208/ /pubmed/37516821 http://dx.doi.org/10.1186/s12880-023-01061-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Wu, Jiwei
Xuan, Shibin
Scale-aware dense residual retinal vessel segmentation network with multi-output weighted loss
title Scale-aware dense residual retinal vessel segmentation network with multi-output weighted loss
title_full Scale-aware dense residual retinal vessel segmentation network with multi-output weighted loss
title_fullStr Scale-aware dense residual retinal vessel segmentation network with multi-output weighted loss
title_full_unstemmed Scale-aware dense residual retinal vessel segmentation network with multi-output weighted loss
title_short Scale-aware dense residual retinal vessel segmentation network with multi-output weighted loss
title_sort scale-aware dense residual retinal vessel segmentation network with multi-output weighted loss
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10387208/
https://www.ncbi.nlm.nih.gov/pubmed/37516821
http://dx.doi.org/10.1186/s12880-023-01061-y
work_keys_str_mv AT wujiwei scaleawaredenseresidualretinalvesselsegmentationnetworkwithmultioutputweightedloss
AT xuanshibin scaleawaredenseresidualretinalvesselsegmentationnetworkwithmultioutputweightedloss