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Solving the stochastic dynamics of population growth

Population growth is a fundamental process in ecology and evolution. The population size dynamics during growth are often described by deterministic equations derived from kinetic models. Here, we simulate several population growth models and compare the size averaged over many stochastic realizatio...

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Detalles Bibliográficos
Autores principales: Marrec, Loïc, Bank, Claudia, Bertrand, Thibault
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10387745/
https://www.ncbi.nlm.nih.gov/pubmed/37529585
http://dx.doi.org/10.1002/ece3.10295
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author Marrec, Loïc
Bank, Claudia
Bertrand, Thibault
author_facet Marrec, Loïc
Bank, Claudia
Bertrand, Thibault
author_sort Marrec, Loïc
collection PubMed
description Population growth is a fundamental process in ecology and evolution. The population size dynamics during growth are often described by deterministic equations derived from kinetic models. Here, we simulate several population growth models and compare the size averaged over many stochastic realizations with the deterministic predictions. We show that these deterministic equations are generically bad predictors of the average stochastic population dynamics. Specifically, deterministic predictions overestimate the simulated population sizes, especially those of populations starting with a small number of individuals. Describing population growth as a stochastic birth process, we prove that the discrepancy between deterministic predictions and simulated data is due to unclosed‐moment dynamics. In other words, the deterministic approach does not consider the variability of birth times, which is particularly important with small population sizes. We show that some moment‐closure approximations describe the growth dynamics better than the deterministic prediction. However, they do not reduce the error satisfactorily and only apply to some population growth models. We explicitly solve the stochastic growth dynamics, and our solution applies to any population growth model. We show that our solution exactly quantifies the dynamics of a community composed of different strains and correctly predicts the fixation probability of a strain in a serial dilution experiment. Our work sets the foundations for a more faithful modeling of community and population dynamics. It will allow the development of new tools for a more accurate analysis of experimental and empirical results, including the inference of important growth parameters.
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spelling pubmed-103877452023-08-01 Solving the stochastic dynamics of population growth Marrec, Loïc Bank, Claudia Bertrand, Thibault Ecol Evol Research Articles Population growth is a fundamental process in ecology and evolution. The population size dynamics during growth are often described by deterministic equations derived from kinetic models. Here, we simulate several population growth models and compare the size averaged over many stochastic realizations with the deterministic predictions. We show that these deterministic equations are generically bad predictors of the average stochastic population dynamics. Specifically, deterministic predictions overestimate the simulated population sizes, especially those of populations starting with a small number of individuals. Describing population growth as a stochastic birth process, we prove that the discrepancy between deterministic predictions and simulated data is due to unclosed‐moment dynamics. In other words, the deterministic approach does not consider the variability of birth times, which is particularly important with small population sizes. We show that some moment‐closure approximations describe the growth dynamics better than the deterministic prediction. However, they do not reduce the error satisfactorily and only apply to some population growth models. We explicitly solve the stochastic growth dynamics, and our solution applies to any population growth model. We show that our solution exactly quantifies the dynamics of a community composed of different strains and correctly predicts the fixation probability of a strain in a serial dilution experiment. Our work sets the foundations for a more faithful modeling of community and population dynamics. It will allow the development of new tools for a more accurate analysis of experimental and empirical results, including the inference of important growth parameters. John Wiley and Sons Inc. 2023-07-30 /pmc/articles/PMC10387745/ /pubmed/37529585 http://dx.doi.org/10.1002/ece3.10295 Text en © 2023 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Marrec, Loïc
Bank, Claudia
Bertrand, Thibault
Solving the stochastic dynamics of population growth
title Solving the stochastic dynamics of population growth
title_full Solving the stochastic dynamics of population growth
title_fullStr Solving the stochastic dynamics of population growth
title_full_unstemmed Solving the stochastic dynamics of population growth
title_short Solving the stochastic dynamics of population growth
title_sort solving the stochastic dynamics of population growth
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10387745/
https://www.ncbi.nlm.nih.gov/pubmed/37529585
http://dx.doi.org/10.1002/ece3.10295
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