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Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”

X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes...

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Autores principales: ATALAY, Necati, AKCAN, Enver Kamil, GÜL, Mehmet, AYAN, Esra, DESTAN, Ebru, ERTEM, Fatma Betül, TOKAY, Nurettin, ÇAKILKAYA, Barış, NERGİZ, Zeliş, KARAKADIOĞLU, Gözde, KEPCEOĞLU, Abdullah, YAPICI, İlkin, TOSUN, Bilge, BALDIR, Nilüfer, YILDIRIM, Günseli, JOHNSON, J Austin, GÜVEN, Ömür, SHAFIEI, Alaleh, ARSLAN, Nazlı Eylül, YILMAZ, Merve, KULAKMAN, Cahine, PAYDOS, Seyide Seda, ÇİNAL, Zeynep Sena, ŞABANOĞLU, Kardelen, PAZARÇEVİREN, Ayşegül, YILMAZ, Ayşenur, CANBAY, Başak, AŞCI, Bengisu, KARTAL, Esra, TAVLI, Serra, ÇALISEKİ, Mehmet, GÖÇ, Günce, MERMER, Arif, YEŞİLAY, Gamze, ALTUNTAŞ, Sevde, TATEISHI, Hiroshi, OTSUKA, Masami, FUJITA, Mikako, TEKİN, Şaban, ÇİFTÇİ, Halilibrahim, DURDAĞI, Serdar, DİNLER DOĞANAY, Gizem, KARACA, Ezgi, KAPLAN TÜRKÖZ, Burcu, KABASAKAL, Burak Veli, KATI, Ahmet, DEMİRCİ, Hasan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Scientific and Technological Research Council of Turkey (TUBITAK) 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10387866/
https://www.ncbi.nlm.nih.gov/pubmed/37529114
http://dx.doi.org/10.55730/1300-0152.2637
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author ATALAY, Necati
AKCAN, Enver Kamil
GÜL, Mehmet
AYAN, Esra
DESTAN, Ebru
ERTEM, Fatma Betül
TOKAY, Nurettin
ÇAKILKAYA, Barış
NERGİZ, Zeliş
KARAKADIOĞLU, Gözde
KEPCEOĞLU, Abdullah
YAPICI, İlkin
TOSUN, Bilge
BALDIR, Nilüfer
YILDIRIM, Günseli
JOHNSON, J Austin
GÜVEN, Ömür
SHAFIEI, Alaleh
ARSLAN, Nazlı Eylül
YILMAZ, Merve
KULAKMAN, Cahine
PAYDOS, Seyide Seda
ÇİNAL, Zeynep Sena
ŞABANOĞLU, Kardelen
PAZARÇEVİREN, Ayşegül
YILMAZ, Ayşenur
CANBAY, Başak
AŞCI, Bengisu
KARTAL, Esra
TAVLI, Serra
ÇALISEKİ, Mehmet
GÖÇ, Günce
MERMER, Arif
YEŞİLAY, Gamze
ALTUNTAŞ, Sevde
TATEISHI, Hiroshi
OTSUKA, Masami
FUJITA, Mikako
TEKİN, Şaban
ÇİFTÇİ, Halilibrahim
DURDAĞI, Serdar
DİNLER DOĞANAY, Gizem
KARACA, Ezgi
KAPLAN TÜRKÖZ, Burcu
KABASAKAL, Burak Veli
KATI, Ahmet
DEMİRCİ, Hasan
author_facet ATALAY, Necati
AKCAN, Enver Kamil
GÜL, Mehmet
AYAN, Esra
DESTAN, Ebru
ERTEM, Fatma Betül
TOKAY, Nurettin
ÇAKILKAYA, Barış
NERGİZ, Zeliş
KARAKADIOĞLU, Gözde
KEPCEOĞLU, Abdullah
YAPICI, İlkin
TOSUN, Bilge
BALDIR, Nilüfer
YILDIRIM, Günseli
JOHNSON, J Austin
GÜVEN, Ömür
SHAFIEI, Alaleh
ARSLAN, Nazlı Eylül
YILMAZ, Merve
KULAKMAN, Cahine
PAYDOS, Seyide Seda
ÇİNAL, Zeynep Sena
ŞABANOĞLU, Kardelen
PAZARÇEVİREN, Ayşegül
YILMAZ, Ayşenur
CANBAY, Başak
AŞCI, Bengisu
KARTAL, Esra
TAVLI, Serra
ÇALISEKİ, Mehmet
GÖÇ, Günce
MERMER, Arif
YEŞİLAY, Gamze
ALTUNTAŞ, Sevde
TATEISHI, Hiroshi
OTSUKA, Masami
FUJITA, Mikako
TEKİN, Şaban
ÇİFTÇİ, Halilibrahim
DURDAĞI, Serdar
DİNLER DOĞANAY, Gizem
KARACA, Ezgi
KAPLAN TÜRKÖZ, Burcu
KABASAKAL, Burak Veli
KATI, Ahmet
DEMİRCİ, Hasan
author_sort ATALAY, Necati
collection PubMed
description X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Türkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, İstanbul, Türkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and practical outlook of a state-of-the-art home-source X-ray, using lysozyme as a model protein. The methods and practice described in this article can be applied to any biological sample for structural studies. Therefore, this article will be a valuable practical guide from sample preparation to data analysis.
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spelling pubmed-103878662023-08-01 Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight” ATALAY, Necati AKCAN, Enver Kamil GÜL, Mehmet AYAN, Esra DESTAN, Ebru ERTEM, Fatma Betül TOKAY, Nurettin ÇAKILKAYA, Barış NERGİZ, Zeliş KARAKADIOĞLU, Gözde KEPCEOĞLU, Abdullah YAPICI, İlkin TOSUN, Bilge BALDIR, Nilüfer YILDIRIM, Günseli JOHNSON, J Austin GÜVEN, Ömür SHAFIEI, Alaleh ARSLAN, Nazlı Eylül YILMAZ, Merve KULAKMAN, Cahine PAYDOS, Seyide Seda ÇİNAL, Zeynep Sena ŞABANOĞLU, Kardelen PAZARÇEVİREN, Ayşegül YILMAZ, Ayşenur CANBAY, Başak AŞCI, Bengisu KARTAL, Esra TAVLI, Serra ÇALISEKİ, Mehmet GÖÇ, Günce MERMER, Arif YEŞİLAY, Gamze ALTUNTAŞ, Sevde TATEISHI, Hiroshi OTSUKA, Masami FUJITA, Mikako TEKİN, Şaban ÇİFTÇİ, Halilibrahim DURDAĞI, Serdar DİNLER DOĞANAY, Gizem KARACA, Ezgi KAPLAN TÜRKÖZ, Burcu KABASAKAL, Burak Veli KATI, Ahmet DEMİRCİ, Hasan Turk J Biol Research Article X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g., proteins, nucleic acids, protein complexes, protein-nucleic acid complexes, or large biological compartments). Since its inception, single-crystal cryocrystallography has never been performed in Türkiye due to the lack of a single-crystal X-ray diffractometer. The X-ray diffraction facility recently established at the University of Health Sciences, İstanbul, Türkiye will enable Turkish and international researchers to easily perform high-resolution structural analysis of biomacromolecules from single crystals. Here, we describe the technical and practical outlook of a state-of-the-art home-source X-ray, using lysozyme as a model protein. The methods and practice described in this article can be applied to any biological sample for structural studies. Therefore, this article will be a valuable practical guide from sample preparation to data analysis. Scientific and Technological Research Council of Turkey (TUBITAK) 2023-01-11 /pmc/articles/PMC10387866/ /pubmed/37529114 http://dx.doi.org/10.55730/1300-0152.2637 Text en © TÜBİTAK https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License.
spellingShingle Research Article
ATALAY, Necati
AKCAN, Enver Kamil
GÜL, Mehmet
AYAN, Esra
DESTAN, Ebru
ERTEM, Fatma Betül
TOKAY, Nurettin
ÇAKILKAYA, Barış
NERGİZ, Zeliş
KARAKADIOĞLU, Gözde
KEPCEOĞLU, Abdullah
YAPICI, İlkin
TOSUN, Bilge
BALDIR, Nilüfer
YILDIRIM, Günseli
JOHNSON, J Austin
GÜVEN, Ömür
SHAFIEI, Alaleh
ARSLAN, Nazlı Eylül
YILMAZ, Merve
KULAKMAN, Cahine
PAYDOS, Seyide Seda
ÇİNAL, Zeynep Sena
ŞABANOĞLU, Kardelen
PAZARÇEVİREN, Ayşegül
YILMAZ, Ayşenur
CANBAY, Başak
AŞCI, Bengisu
KARTAL, Esra
TAVLI, Serra
ÇALISEKİ, Mehmet
GÖÇ, Günce
MERMER, Arif
YEŞİLAY, Gamze
ALTUNTAŞ, Sevde
TATEISHI, Hiroshi
OTSUKA, Masami
FUJITA, Mikako
TEKİN, Şaban
ÇİFTÇİ, Halilibrahim
DURDAĞI, Serdar
DİNLER DOĞANAY, Gizem
KARACA, Ezgi
KAPLAN TÜRKÖZ, Burcu
KABASAKAL, Burak Veli
KATI, Ahmet
DEMİRCİ, Hasan
Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”
title Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”
title_full Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”
title_fullStr Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”
title_full_unstemmed Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”
title_short Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source “Turkish DeLight”
title_sort cryogenic x-ray crystallographic studies of biomacromolecules at turkish light source “turkish delight”
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10387866/
https://www.ncbi.nlm.nih.gov/pubmed/37529114
http://dx.doi.org/10.55730/1300-0152.2637
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