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A latent scale model to minimize subjectivity in the analysis of visual rating data for the National Turfgrass Evaluation Program
INTRODUCTION: Traditional evaluation procedure in National Turfgrass Evaluation Program (NTEP) relies on visually assessing replicated turf plots at multiple testing locations. This process yields ordinal data; however, statistical models that falsely assume these to be interval or ratio data have a...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390229/ https://www.ncbi.nlm.nih.gov/pubmed/37528968 http://dx.doi.org/10.3389/fpls.2023.1135918 |
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author | Qu, Yuanshuo Kne, Len Graham, Steve Watkins, Eric Morris, Kevin |
author_facet | Qu, Yuanshuo Kne, Len Graham, Steve Watkins, Eric Morris, Kevin |
author_sort | Qu, Yuanshuo |
collection | PubMed |
description | INTRODUCTION: Traditional evaluation procedure in National Turfgrass Evaluation Program (NTEP) relies on visually assessing replicated turf plots at multiple testing locations. This process yields ordinal data; however, statistical models that falsely assume these to be interval or ratio data have almost exclusively been applied in the subsequent analysis. This practice raises concerns about procedural subjectivity, preventing objective comparisons of cultivars across different test locations. It may also lead to serious errors, such as increased false alarms, failures to detect effects, and even inversions of differences among groups. METHODS: We reviewed this problem, identified sources of subjectivity, and presented a model-based approach to minimize subjectivity, allowing objective comparisons of cultivars across different locations and better monitoring of the evaluation procedure. We demonstrate how to fit the described model in a Bayesian framework with Stan, using datasets on overall turf quality ratings from the 2017 NTEP Kentucky bluegrass trials at seven testing locations. RESULTS: Compared with the existing method, ours allows the estimation of additional parameters, i.e., category thresholds, rating severity, and within-field spatial variations, and provides better separation of cultivar means and more realistic standard deviations. DISCUSSION: To implement the proposed model, additional information on rater identification, trial layout, rating date is needed. Given the model assumptions, we recommend small trials to reduce rater fatigue. For large trials, ratings can be conducted for each replication on multiple occasions instead of all at once. To minimize subjectivity, multiple raters are required. We also proposed new ideas on temporal analysis, incorporating existing knowledge of turfgrass. |
format | Online Article Text |
id | pubmed-10390229 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-103902292023-08-01 A latent scale model to minimize subjectivity in the analysis of visual rating data for the National Turfgrass Evaluation Program Qu, Yuanshuo Kne, Len Graham, Steve Watkins, Eric Morris, Kevin Front Plant Sci Plant Science INTRODUCTION: Traditional evaluation procedure in National Turfgrass Evaluation Program (NTEP) relies on visually assessing replicated turf plots at multiple testing locations. This process yields ordinal data; however, statistical models that falsely assume these to be interval or ratio data have almost exclusively been applied in the subsequent analysis. This practice raises concerns about procedural subjectivity, preventing objective comparisons of cultivars across different test locations. It may also lead to serious errors, such as increased false alarms, failures to detect effects, and even inversions of differences among groups. METHODS: We reviewed this problem, identified sources of subjectivity, and presented a model-based approach to minimize subjectivity, allowing objective comparisons of cultivars across different locations and better monitoring of the evaluation procedure. We demonstrate how to fit the described model in a Bayesian framework with Stan, using datasets on overall turf quality ratings from the 2017 NTEP Kentucky bluegrass trials at seven testing locations. RESULTS: Compared with the existing method, ours allows the estimation of additional parameters, i.e., category thresholds, rating severity, and within-field spatial variations, and provides better separation of cultivar means and more realistic standard deviations. DISCUSSION: To implement the proposed model, additional information on rater identification, trial layout, rating date is needed. Given the model assumptions, we recommend small trials to reduce rater fatigue. For large trials, ratings can be conducted for each replication on multiple occasions instead of all at once. To minimize subjectivity, multiple raters are required. We also proposed new ideas on temporal analysis, incorporating existing knowledge of turfgrass. Frontiers Media S.A. 2023-07-06 /pmc/articles/PMC10390229/ /pubmed/37528968 http://dx.doi.org/10.3389/fpls.2023.1135918 Text en Copyright © 2023 Qu, Kne, Graham, Watkins and Morris https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Qu, Yuanshuo Kne, Len Graham, Steve Watkins, Eric Morris, Kevin A latent scale model to minimize subjectivity in the analysis of visual rating data for the National Turfgrass Evaluation Program |
title | A latent scale model to minimize subjectivity in the analysis of visual rating data for the National Turfgrass Evaluation Program |
title_full | A latent scale model to minimize subjectivity in the analysis of visual rating data for the National Turfgrass Evaluation Program |
title_fullStr | A latent scale model to minimize subjectivity in the analysis of visual rating data for the National Turfgrass Evaluation Program |
title_full_unstemmed | A latent scale model to minimize subjectivity in the analysis of visual rating data for the National Turfgrass Evaluation Program |
title_short | A latent scale model to minimize subjectivity in the analysis of visual rating data for the National Turfgrass Evaluation Program |
title_sort | latent scale model to minimize subjectivity in the analysis of visual rating data for the national turfgrass evaluation program |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390229/ https://www.ncbi.nlm.nih.gov/pubmed/37528968 http://dx.doi.org/10.3389/fpls.2023.1135918 |
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