Cargando…

An ontology design for validating childhood cancer registry data

Ontologies can provide a valuable role in the work of cancer registration, particularly as a tool for managing and navigating the various classification systems and coding rules. Further advantages accrue from the ability to formalise the coding rule base using description logics and thereby benefit...

Descripción completa

Detalles Bibliográficos
Autores principales: Nicholson, Nicholas, Giusti, Francesco, Martos, Carmen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390255/
https://www.ncbi.nlm.nih.gov/pubmed/37529693
http://dx.doi.org/10.3389/fonc.2023.1212434
_version_ 1785082438992527360
author Nicholson, Nicholas
Giusti, Francesco
Martos, Carmen
author_facet Nicholson, Nicholas
Giusti, Francesco
Martos, Carmen
author_sort Nicholson, Nicholas
collection PubMed
description Ontologies can provide a valuable role in the work of cancer registration, particularly as a tool for managing and navigating the various classification systems and coding rules. Further advantages accrue from the ability to formalise the coding rule base using description logics and thereby benefit from the associated automatic reasoning functionality. Drawing from earlier work that showed the viability of applying ontologies in the data validation tasks of cancer registries, an ontology was created using a modular approach to handle the specific checks for childhood cancers. The ontology was able to handle successfully the various inter-variable checks using the axiomatic constructs of the web ontology language. Application of an ontological approach for data validation can greatly simplify the maintenance of the coding rules and facilitate the federation of any centralised validation process to the local level. It also provides an improved means of visualising the rule interdependencies from different perspectives. Performance of the automatic reasoning process can be a limiting issue for very large datasets and will be a focus for future work. Results are provided showing how the ontology is able to validate cancer case records typical for childhood tumours.
format Online
Article
Text
id pubmed-10390255
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-103902552023-08-01 An ontology design for validating childhood cancer registry data Nicholson, Nicholas Giusti, Francesco Martos, Carmen Front Oncol Oncology Ontologies can provide a valuable role in the work of cancer registration, particularly as a tool for managing and navigating the various classification systems and coding rules. Further advantages accrue from the ability to formalise the coding rule base using description logics and thereby benefit from the associated automatic reasoning functionality. Drawing from earlier work that showed the viability of applying ontologies in the data validation tasks of cancer registries, an ontology was created using a modular approach to handle the specific checks for childhood cancers. The ontology was able to handle successfully the various inter-variable checks using the axiomatic constructs of the web ontology language. Application of an ontological approach for data validation can greatly simplify the maintenance of the coding rules and facilitate the federation of any centralised validation process to the local level. It also provides an improved means of visualising the rule interdependencies from different perspectives. Performance of the automatic reasoning process can be a limiting issue for very large datasets and will be a focus for future work. Results are provided showing how the ontology is able to validate cancer case records typical for childhood tumours. Frontiers Media S.A. 2023-07-17 /pmc/articles/PMC10390255/ /pubmed/37529693 http://dx.doi.org/10.3389/fonc.2023.1212434 Text en Copyright © 2023 Nicholson, Giusti and Martos https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Nicholson, Nicholas
Giusti, Francesco
Martos, Carmen
An ontology design for validating childhood cancer registry data
title An ontology design for validating childhood cancer registry data
title_full An ontology design for validating childhood cancer registry data
title_fullStr An ontology design for validating childhood cancer registry data
title_full_unstemmed An ontology design for validating childhood cancer registry data
title_short An ontology design for validating childhood cancer registry data
title_sort ontology design for validating childhood cancer registry data
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390255/
https://www.ncbi.nlm.nih.gov/pubmed/37529693
http://dx.doi.org/10.3389/fonc.2023.1212434
work_keys_str_mv AT nicholsonnicholas anontologydesignforvalidatingchildhoodcancerregistrydata
AT giustifrancesco anontologydesignforvalidatingchildhoodcancerregistrydata
AT martoscarmen anontologydesignforvalidatingchildhoodcancerregistrydata
AT nicholsonnicholas ontologydesignforvalidatingchildhoodcancerregistrydata
AT giustifrancesco ontologydesignforvalidatingchildhoodcancerregistrydata
AT martoscarmen ontologydesignforvalidatingchildhoodcancerregistrydata