Cargando…
A bioinformatics approach to identify a disulfidptosis-related gene signature for prognostic implication in colon adenocarcinoma
Colon adenocarcinoma (COAD) is a type of cancer that arises from the glandular epithelial cells that produce mucus in the colon. COAD is influenced by various factors, including genetics, environment and lifestyle. The outcome of COAD is determined by the tumor stage, location, molecular characteris...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390519/ https://www.ncbi.nlm.nih.gov/pubmed/37524774 http://dx.doi.org/10.1038/s41598-023-39563-y |
_version_ | 1785082493306667008 |
---|---|
author | Hu, Gunchu Yao, Hongliang Wei, Zuxing Li, Linye Yu, Zhuowen Li, Jian Luo, Xiong Guo, Zhushu |
author_facet | Hu, Gunchu Yao, Hongliang Wei, Zuxing Li, Linye Yu, Zhuowen Li, Jian Luo, Xiong Guo, Zhushu |
author_sort | Hu, Gunchu |
collection | PubMed |
description | Colon adenocarcinoma (COAD) is a type of cancer that arises from the glandular epithelial cells that produce mucus in the colon. COAD is influenced by various factors, including genetics, environment and lifestyle. The outcome of COAD is determined by the tumor stage, location, molecular characteristics and treatment. Disulfidptosis is a new mode of cell death that may affect cancer development. We discovered genes associated with disulfidptosis in colon adenocarcinoma and proposed them as novel biomarkers and therapeutic targets for COAD. We analyzed the mRNA expression data and clinical information of COAD patients from The Cancer Genome Atlas (TCGA) database and Xena databases, extracted disulfidptosis-related genes from the latest reports on disulfidptosis. We used machine learning to select key features and build a signature and validated the risk model using data from the Gene Expression Omnibus (GEO) database and Human Protein Atlas (HPA). We also explored the potential biological functions and therapeutic implications of the disulfidptosis-related genes using CIBERSORTx and GDSC2 databases. We identified four disulfidptosis-related genes: TRIP6, OXSM, MYH3 and MYH4. These genes predicted COAD patient survival and modulated the tumor microenvironment, drug sensitivity and immune microenvironment. Our study reveals the importance of disulfidptosis-related genes for COAD prognosis and therapy. Immune infiltration and drug susceptibility results provide important clues for finding new personalized treatment options for COAD. These findings may facilitate personalized cancer treatment. |
format | Online Article Text |
id | pubmed-10390519 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103905192023-08-02 A bioinformatics approach to identify a disulfidptosis-related gene signature for prognostic implication in colon adenocarcinoma Hu, Gunchu Yao, Hongliang Wei, Zuxing Li, Linye Yu, Zhuowen Li, Jian Luo, Xiong Guo, Zhushu Sci Rep Article Colon adenocarcinoma (COAD) is a type of cancer that arises from the glandular epithelial cells that produce mucus in the colon. COAD is influenced by various factors, including genetics, environment and lifestyle. The outcome of COAD is determined by the tumor stage, location, molecular characteristics and treatment. Disulfidptosis is a new mode of cell death that may affect cancer development. We discovered genes associated with disulfidptosis in colon adenocarcinoma and proposed them as novel biomarkers and therapeutic targets for COAD. We analyzed the mRNA expression data and clinical information of COAD patients from The Cancer Genome Atlas (TCGA) database and Xena databases, extracted disulfidptosis-related genes from the latest reports on disulfidptosis. We used machine learning to select key features and build a signature and validated the risk model using data from the Gene Expression Omnibus (GEO) database and Human Protein Atlas (HPA). We also explored the potential biological functions and therapeutic implications of the disulfidptosis-related genes using CIBERSORTx and GDSC2 databases. We identified four disulfidptosis-related genes: TRIP6, OXSM, MYH3 and MYH4. These genes predicted COAD patient survival and modulated the tumor microenvironment, drug sensitivity and immune microenvironment. Our study reveals the importance of disulfidptosis-related genes for COAD prognosis and therapy. Immune infiltration and drug susceptibility results provide important clues for finding new personalized treatment options for COAD. These findings may facilitate personalized cancer treatment. Nature Publishing Group UK 2023-07-31 /pmc/articles/PMC10390519/ /pubmed/37524774 http://dx.doi.org/10.1038/s41598-023-39563-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Hu, Gunchu Yao, Hongliang Wei, Zuxing Li, Linye Yu, Zhuowen Li, Jian Luo, Xiong Guo, Zhushu A bioinformatics approach to identify a disulfidptosis-related gene signature for prognostic implication in colon adenocarcinoma |
title | A bioinformatics approach to identify a disulfidptosis-related gene signature for prognostic implication in colon adenocarcinoma |
title_full | A bioinformatics approach to identify a disulfidptosis-related gene signature for prognostic implication in colon adenocarcinoma |
title_fullStr | A bioinformatics approach to identify a disulfidptosis-related gene signature for prognostic implication in colon adenocarcinoma |
title_full_unstemmed | A bioinformatics approach to identify a disulfidptosis-related gene signature for prognostic implication in colon adenocarcinoma |
title_short | A bioinformatics approach to identify a disulfidptosis-related gene signature for prognostic implication in colon adenocarcinoma |
title_sort | bioinformatics approach to identify a disulfidptosis-related gene signature for prognostic implication in colon adenocarcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390519/ https://www.ncbi.nlm.nih.gov/pubmed/37524774 http://dx.doi.org/10.1038/s41598-023-39563-y |
work_keys_str_mv | AT hugunchu abioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT yaohongliang abioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT weizuxing abioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT lilinye abioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT yuzhuowen abioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT lijian abioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT luoxiong abioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT guozhushu abioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT hugunchu bioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT yaohongliang bioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT weizuxing bioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT lilinye bioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT yuzhuowen bioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT lijian bioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT luoxiong bioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma AT guozhushu bioinformaticsapproachtoidentifyadisulfidptosisrelatedgenesignatureforprognosticimplicationincolonadenocarcinoma |