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On-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning

We present a rapid label-free imaging flow cytometry and cell classification approach based directly on raw digital holograms. Off-axis holography enables real-time acquisition of cells during rapid flow. However, classification of the cells typically requires reconstruction of their quantitative ph...

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Autores principales: Dudaie, Matan, Barnea, Itay, Nissim, Noga, Shaked, Natan T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390541/
https://www.ncbi.nlm.nih.gov/pubmed/37524884
http://dx.doi.org/10.1038/s41598-023-38160-3
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author Dudaie, Matan
Barnea, Itay
Nissim, Noga
Shaked, Natan T.
author_facet Dudaie, Matan
Barnea, Itay
Nissim, Noga
Shaked, Natan T.
author_sort Dudaie, Matan
collection PubMed
description We present a rapid label-free imaging flow cytometry and cell classification approach based directly on raw digital holograms. Off-axis holography enables real-time acquisition of cells during rapid flow. However, classification of the cells typically requires reconstruction of their quantitative phase profiles, which is time-consuming. Here, we present a new approach for label-free classification of individual cells based directly on the raw off-axis holographic images, each of which contains the complete complex wavefront (amplitude and quantitative phase profiles) of the cell. To obtain this, we built a convolutional neural network, which is invariant to the spatial frequencies and directions of the interference fringes of the off-axis holograms. We demonstrate the effectiveness of this approach using four types of cancer cells. This approach has the potential to significantly improve both speed and robustness of imaging flow cytometry, enabling real-time label-free classification of individual cells.
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spelling pubmed-103905412023-08-02 On-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning Dudaie, Matan Barnea, Itay Nissim, Noga Shaked, Natan T. Sci Rep Article We present a rapid label-free imaging flow cytometry and cell classification approach based directly on raw digital holograms. Off-axis holography enables real-time acquisition of cells during rapid flow. However, classification of the cells typically requires reconstruction of their quantitative phase profiles, which is time-consuming. Here, we present a new approach for label-free classification of individual cells based directly on the raw off-axis holographic images, each of which contains the complete complex wavefront (amplitude and quantitative phase profiles) of the cell. To obtain this, we built a convolutional neural network, which is invariant to the spatial frequencies and directions of the interference fringes of the off-axis holograms. We demonstrate the effectiveness of this approach using four types of cancer cells. This approach has the potential to significantly improve both speed and robustness of imaging flow cytometry, enabling real-time label-free classification of individual cells. Nature Publishing Group UK 2023-07-31 /pmc/articles/PMC10390541/ /pubmed/37524884 http://dx.doi.org/10.1038/s41598-023-38160-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dudaie, Matan
Barnea, Itay
Nissim, Noga
Shaked, Natan T.
On-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning
title On-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning
title_full On-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning
title_fullStr On-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning
title_full_unstemmed On-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning
title_short On-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning
title_sort on-chip label-free cell classification based directly on off-axis holograms and spatial-frequency-invariant deep learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390541/
https://www.ncbi.nlm.nih.gov/pubmed/37524884
http://dx.doi.org/10.1038/s41598-023-38160-3
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