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Multi‐objective Bayesian algorithm automatically discovers low‐cost high‐growth serum‐free media for cellular agriculture application

In this work, we applied a multi‐information source modeling technique to solve a multi‐objective Bayesian optimization problem involving the simultaneous minimization of cost and maximization of growth for serum‐free C2C12 cells using a hyper‐volume improvement acquisition function. In sequential b...

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Detalles Bibliográficos
Autores principales: Cosenza, Zachary, Block, David E., Baar, Keith, Chen, Xingyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390662/
https://www.ncbi.nlm.nih.gov/pubmed/37533728
http://dx.doi.org/10.1002/elsc.202300005
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author Cosenza, Zachary
Block, David E.
Baar, Keith
Chen, Xingyu
author_facet Cosenza, Zachary
Block, David E.
Baar, Keith
Chen, Xingyu
author_sort Cosenza, Zachary
collection PubMed
description In this work, we applied a multi‐information source modeling technique to solve a multi‐objective Bayesian optimization problem involving the simultaneous minimization of cost and maximization of growth for serum‐free C2C12 cells using a hyper‐volume improvement acquisition function. In sequential batches of custom media experiments designed using our Bayesian criteria, collected using multiple assays targeting different cellular growth dynamics, the algorithm learned to identify the trade‐off relationship between long‐term growth and cost. We were able to identify several media with [Formula: see text] more growth of C2C12 cells than the control, as well as a medium with 23% more growth at only 62.5% of the cost of the control. These algorithmically generated media also maintained growth far past the study period, indicating the modeling approach approximates the cell growth well from an extremely limited data set.
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spelling pubmed-103906622023-08-02 Multi‐objective Bayesian algorithm automatically discovers low‐cost high‐growth serum‐free media for cellular agriculture application Cosenza, Zachary Block, David E. Baar, Keith Chen, Xingyu Eng Life Sci Research Articles In this work, we applied a multi‐information source modeling technique to solve a multi‐objective Bayesian optimization problem involving the simultaneous minimization of cost and maximization of growth for serum‐free C2C12 cells using a hyper‐volume improvement acquisition function. In sequential batches of custom media experiments designed using our Bayesian criteria, collected using multiple assays targeting different cellular growth dynamics, the algorithm learned to identify the trade‐off relationship between long‐term growth and cost. We were able to identify several media with [Formula: see text] more growth of C2C12 cells than the control, as well as a medium with 23% more growth at only 62.5% of the cost of the control. These algorithmically generated media also maintained growth far past the study period, indicating the modeling approach approximates the cell growth well from an extremely limited data set. John Wiley and Sons Inc. 2023-06-28 /pmc/articles/PMC10390662/ /pubmed/37533728 http://dx.doi.org/10.1002/elsc.202300005 Text en © 2023 The Authors. Engineering in Life Sciences published by Wiley‐VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Cosenza, Zachary
Block, David E.
Baar, Keith
Chen, Xingyu
Multi‐objective Bayesian algorithm automatically discovers low‐cost high‐growth serum‐free media for cellular agriculture application
title Multi‐objective Bayesian algorithm automatically discovers low‐cost high‐growth serum‐free media for cellular agriculture application
title_full Multi‐objective Bayesian algorithm automatically discovers low‐cost high‐growth serum‐free media for cellular agriculture application
title_fullStr Multi‐objective Bayesian algorithm automatically discovers low‐cost high‐growth serum‐free media for cellular agriculture application
title_full_unstemmed Multi‐objective Bayesian algorithm automatically discovers low‐cost high‐growth serum‐free media for cellular agriculture application
title_short Multi‐objective Bayesian algorithm automatically discovers low‐cost high‐growth serum‐free media for cellular agriculture application
title_sort multi‐objective bayesian algorithm automatically discovers low‐cost high‐growth serum‐free media for cellular agriculture application
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390662/
https://www.ncbi.nlm.nih.gov/pubmed/37533728
http://dx.doi.org/10.1002/elsc.202300005
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