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Improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames

Recent developments of deep learning methods have demonstrated their feasibility in liver malignancy diagnosis using ultrasound (US) images. However, most of these methods require manual selection and annotation of US images by radiologists, which limit their practical application. On the other hand...

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Autores principales: Xu, Yiming, Zheng, Bowen, Liu, Xiaohong, Wu, Tao, Ju, Jinxiu, Wang, Shijie, Lian, Yufan, Zhang, Hongjun, Liang, Tong, Sang, Ye, Jiang, Rui, Wang, Guangyu, Ren, Jie, Chen, Ting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390801/
https://www.ncbi.nlm.nih.gov/pubmed/36575566
http://dx.doi.org/10.1093/bib/bbac569
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author Xu, Yiming
Zheng, Bowen
Liu, Xiaohong
Wu, Tao
Ju, Jinxiu
Wang, Shijie
Lian, Yufan
Zhang, Hongjun
Liang, Tong
Sang, Ye
Jiang, Rui
Wang, Guangyu
Ren, Jie
Chen, Ting
author_facet Xu, Yiming
Zheng, Bowen
Liu, Xiaohong
Wu, Tao
Ju, Jinxiu
Wang, Shijie
Lian, Yufan
Zhang, Hongjun
Liang, Tong
Sang, Ye
Jiang, Rui
Wang, Guangyu
Ren, Jie
Chen, Ting
author_sort Xu, Yiming
collection PubMed
description Recent developments of deep learning methods have demonstrated their feasibility in liver malignancy diagnosis using ultrasound (US) images. However, most of these methods require manual selection and annotation of US images by radiologists, which limit their practical application. On the other hand, US videos provide more comprehensive morphological information about liver masses and their relationships with surrounding structures than US images, potentially leading to a more accurate diagnosis. Here, we developed a fully automated artificial intelligence (AI) pipeline to imitate the workflow of radiologists for detecting liver masses and diagnosing liver malignancy. In this pipeline, we designed an automated mass-guided strategy that used segmentation information to direct diagnostic models to focus on liver masses, thus increasing diagnostic accuracy. The diagnostic models based on US videos utilized bi-directional convolutional long short-term memory modules with an attention-boosted module to learn and fuse spatiotemporal information from consecutive video frames. Using a large-scale dataset of 50 063 US images and video frames from 11 468 patients, we developed and tested the AI pipeline and investigated its applications. A dataset of annotated US images is available at https://doi.org/10.5281/zenodo.7272660.
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spelling pubmed-103908012023-08-02 Improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames Xu, Yiming Zheng, Bowen Liu, Xiaohong Wu, Tao Ju, Jinxiu Wang, Shijie Lian, Yufan Zhang, Hongjun Liang, Tong Sang, Ye Jiang, Rui Wang, Guangyu Ren, Jie Chen, Ting Brief Bioinform Problem Solving Protocol Recent developments of deep learning methods have demonstrated their feasibility in liver malignancy diagnosis using ultrasound (US) images. However, most of these methods require manual selection and annotation of US images by radiologists, which limit their practical application. On the other hand, US videos provide more comprehensive morphological information about liver masses and their relationships with surrounding structures than US images, potentially leading to a more accurate diagnosis. Here, we developed a fully automated artificial intelligence (AI) pipeline to imitate the workflow of radiologists for detecting liver masses and diagnosing liver malignancy. In this pipeline, we designed an automated mass-guided strategy that used segmentation information to direct diagnostic models to focus on liver masses, thus increasing diagnostic accuracy. The diagnostic models based on US videos utilized bi-directional convolutional long short-term memory modules with an attention-boosted module to learn and fuse spatiotemporal information from consecutive video frames. Using a large-scale dataset of 50 063 US images and video frames from 11 468 patients, we developed and tested the AI pipeline and investigated its applications. A dataset of annotated US images is available at https://doi.org/10.5281/zenodo.7272660. Oxford University Press 2022-12-27 /pmc/articles/PMC10390801/ /pubmed/36575566 http://dx.doi.org/10.1093/bib/bbac569 Text en © The Author(s) 2022. Published by Oxford University Press. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Problem Solving Protocol
Xu, Yiming
Zheng, Bowen
Liu, Xiaohong
Wu, Tao
Ju, Jinxiu
Wang, Shijie
Lian, Yufan
Zhang, Hongjun
Liang, Tong
Sang, Ye
Jiang, Rui
Wang, Guangyu
Ren, Jie
Chen, Ting
Improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames
title Improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames
title_full Improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames
title_fullStr Improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames
title_full_unstemmed Improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames
title_short Improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames
title_sort improving artificial intelligence pipeline for liver malignancy diagnosis using ultrasound images and video frames
topic Problem Solving Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10390801/
https://www.ncbi.nlm.nih.gov/pubmed/36575566
http://dx.doi.org/10.1093/bib/bbac569
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