Cargando…

Targeted proteomics data interpretation with DeepMRM

Targeted proteomics is widely utilized in clinical proteomics; however, researchers often devote substantial time to manual data interpretation, which hinders the transferability, reproducibility, and scalability of this approach. We introduce DeepMRM, a software package based on deep learning algor...

Descripción completa

Detalles Bibliográficos
Autores principales:	Park, Jungkap, Wilkins, Christopher, Avtonomov, Dmitry, Hong, Jiwon, Back, Seunghoon, Kim, Hokeun, Shulman, Nicholas, MacLean, Brendan X., Lee, Sang-Won, Kim, Sangtae
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2023
Materias:	Report
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10391571/ https://www.ncbi.nlm.nih.gov/pubmed/37533638 http://dx.doi.org/10.1016/j.crmeth.2023.100521

Ejemplares similares

Integrated analysis of global proteome, phosphoproteome, and glycoproteome enables complementary interpretation of disease-related protein networks
por: Park, Jong-Moon, et al.
Publicado: (2015)

MRM2 and MRM3 are involved in biogenesis of the large subunit of the mitochondrial ribosome
por: Rorbach, Joanna, et al.
Publicado: (2014)

Proteomic analysis by iTRAQ-MRM of soybean resistance to Lamprosema Indicate
por: Zeng, Weiying, et al.
Publicado: (2017)

Tools and protocol for quantification of myosin phosphorylation with MRM-MS
por: MacDonald, Justin A., et al.
Publicado: (2018)

MRM-DIFF: data processing strategy for differential analysis in large scale MRM-based lipidomics studies
por: Tsugawa, Hiroshi, et al.
Publicado: (2015)

Informed-Proteomics: Open Source Software Package for Top-down Proteomics
por: Park, Jungkap, et al.
Publicado: (2017)

Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics
por: Mani, D R, et al.
Publicado: (2012)

Multiplexed MRM-Based Proteomics Identified Multiple Biomarkers of Disease Severity in Human Heart Failure
por: Brioschi, Maura, et al.
Publicado: (2021)

Comparative salivary proteomics analysis of children with and without dental caries using the iTRAQ/MRM approach
por: Wang, Kun, et al.
Publicado: (2018)

MSFragger: ultrafast and comprehensive peptide identification in shotgun proteomics
por: Kong, Andy T., et al.
Publicado: (2017)

Post-mortem magnetic resonance microscopy (MRM) of the murine brain at 7 Tesla results in a gain of resolution as compared to in vivo MRM
por: von Bohlen und Halbach, Oliver, et al.
Publicado: (2014)

Web portal for analytical validation of MRM-MS assay abided with integrative multinational guidelines
por: Kim, Jaenyeon, et al.
Publicado: (2020)

Traceability Research on Dendrobium devonianum Based on SWATHtoMRM
por: Lin, Tao, et al.
Publicado: (2023)

Rapid empirical discovery of optimal peptides for targeted proteomics
por: Stergachis, Andrew B., et al.
Publicado: (2011)

MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale
por: Kohler, Devon, et al.
Publicado: (2023)

Proteomic genotyping of SNP of Complement Factor H (CFH) Y402H and I62V using multiple reaction monitoring (MRM) assays
por: Kim, Kyoung Lae, et al.
Publicado: (2022)

Magnetic Resonance Microscopy (MRM) of Single Mammalian Myofibers and Myonuclei
por: Lee, Choong H., et al.
Publicado: (2017)

An MRM-Based Multiplexed Quantification Assay for Human Adipokines and Apolipoproteins
por: Krieg, Laura, et al.
Publicado: (2020)

Magnetic Recording Method (MRM) for Nondestructive Evaluation of Ferromagnetic Materials
por: Chady, Tomasz, et al.
Publicado: (2022)

Universal database search tool for proteomics
por: Kim, Sangtae, et al.
Publicado: (2014)

Integrative analysis for the discovery of lung cancer serological markers and validation by MRM-MS
por: Shin, Jihye, et al.
Publicado: (2017)

Audit logs to enforce document integrity in Skyline and Panorama
por: Rohde, Tobias, et al.
Publicado: (2020)

PChopper: high throughput peptide prediction for MRM/SRM transition design
por: Afzal, Vackar, et al.
Publicado: (2011)

Profiling Global Kinome Signatures of the Radioresistant MCF-7/C6 Breast Cancer Cells Using MRM-based Targeted Proteomics
por: Guo, Lei, et al.
Publicado: (2014)

Dataset describing the development, optimization and application of SRM/MRM based targeted proteomics strategy for quantification of potential biomarkers of EGFR TKI sensitivity
por: Awasthi, Shivangi, et al.
Publicado: (2018)

Proteomic Analysis of the Early Development of the Phalaenopsis amabilis Flower Bud under Low Temperature Induction Using the iTRAQ/MRM Approach
por: Chen, Cong, et al.
Publicado: (2020)

Development of a UPLC-MRM-based targeted proteomic method to profile subcellular organelle marker proteins from human liver tissues
por: Qiu, Xiazi, et al.
Publicado: (2022)

Data Pre-Processing for Label-Free Multiple Reaction Monitoring (MRM) Experiments
por: Chung, Lisa M., et al.
Publicado: (2014)

Towards reproducible MRM based biomarker discovery using dried blood spots
por: Ozcan, Sureyya, et al.
Publicado: (2017)

Targeted MRM Quantification of Urinary Proteins in Chronic Kidney Disease Caused by Glomerulopathies
por: Kononikhin, Alexey S., et al.
Publicado: (2023)

Rapidity-Alignment and $mrm{p}_T$ Compensation of Particle Pairs in Hadronic $Z^0$ Decays
por: Abdallah, J., et al.
Publicado: (2002)

MS/MS library facilitated MRM quantification of native peptides prepared by denaturing ultrafiltration
por: Lenco, Juraj, et al.
Publicado: (2012)

MRMPlus: an open source quality control and assessment tool for SRM/MRM assay development
por: Aiyetan, Paul, et al.
Publicado: (2015)

Application of LC-MS/MS MRM to Determine Staphylococcal Enterotoxins (SEB and SEA) in Milk
por: Andjelkovic, Mirjana, et al.
Publicado: (2016)

Serum Metabolomic Analysis of Feline Mammary Carcinomas based on LC-MS and MRM Techniques
por: Zheng, Jia-san, et al.
Publicado: (2020)

Metabolomic Analysis and MRM Verification of Coarse and Fine Skin Tissues of Liaoning Cashmere Goat
por: Xu, Yanan, et al.
Publicado: (2022)

Development of Tier 2 LC-MRM-MS protein quantification methods for liquid biopsies
por: Diederiks, Nina, et al.
Publicado: (2022)

Simultaneous and Rapid Detection of Multiple Epimers and Isomers of Aspartyl Residues in Lens Proteins Using an LC-MS-MRM Method
por: Fujii, Noriko, et al.
Publicado: (2020)

Panorama: A Targeted Proteomics Knowledge Base
por: Sharma, Vagisha, et al.
Publicado: (2014)

Higher-Order Synaptic Interactions Coordinate Dynamics in Recurrent Networks
por: Chambers, Brendan, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_r8ljbglsah6rvo31uo361d0a7j