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INES: Interactive tool for construction and extrapolation of partitioned survival models

BACKGROUND: INES (INteractive model for Extrapolation of Survival and cost) provides an open-access tool powered by R that implements three-state partitioned survival models (PSM). This article describes the properties of the tool, and the situations where INES may or may not be suitable. METHODS: I...

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Autores principales: Gimeno-Ballester, Vicente, Perez-Troncoso, Daniel, Olry-Labry, Antonio, Epstein, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10391963/
https://www.ncbi.nlm.nih.gov/pubmed/37525183
http://dx.doi.org/10.1186/s12962-023-00456-6
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author Gimeno-Ballester, Vicente
Perez-Troncoso, Daniel
Olry-Labry, Antonio
Epstein, David
author_facet Gimeno-Ballester, Vicente
Perez-Troncoso, Daniel
Olry-Labry, Antonio
Epstein, David
author_sort Gimeno-Ballester, Vicente
collection PubMed
description BACKGROUND: INES (INteractive model for Extrapolation of Survival and cost) provides an open-access tool powered by R that implements three-state partitioned survival models (PSM). This article describes the properties of the tool, and the situations where INES may or may not be suitable. METHODS: INES is designed to be used by investigators or healthcare professionals who have a good grasp of the principles of economic evaluation and understand the strengths and weaknesses of partitioned survival models, but are not sufficiently familiar with a statistical package such as Excel or R to be able to construct and test a de-novo PSM themselves. INES is delivered to the user via a batch file. Once downloaded to the user’s hard drive, it interacts with the user via a portable version of R with web interactivity built in Shiny. INES requires absolutely no knowledge of R and the user does not need to have R or any of its dependences installed. Hence the user will deal with a standalone Shiny app. Inputs (digitalized survival curves, unit costs, posology, hazard ratios, discount rate) can be uploaded from a template spreadsheet. RESULTS: The INES application provides a seamlessly integrated package for estimating a set of parametric hazard functions for progression free and overall survival, selecting an appropriate function from this menu, and applying this as an input to a PSM to calculate mean costs and quality-adjusted life years. Examples are given that may serve as a tutorial. CONCLUSION: INES offers a rapid, flexible, robust and transparent tool for parametric survival analysis and calculating a PSM that can be used in many different contexts. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12962-023-00456-6.
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spelling pubmed-103919632023-08-02 INES: Interactive tool for construction and extrapolation of partitioned survival models Gimeno-Ballester, Vicente Perez-Troncoso, Daniel Olry-Labry, Antonio Epstein, David Cost Eff Resour Alloc Methodology BACKGROUND: INES (INteractive model for Extrapolation of Survival and cost) provides an open-access tool powered by R that implements three-state partitioned survival models (PSM). This article describes the properties of the tool, and the situations where INES may or may not be suitable. METHODS: INES is designed to be used by investigators or healthcare professionals who have a good grasp of the principles of economic evaluation and understand the strengths and weaknesses of partitioned survival models, but are not sufficiently familiar with a statistical package such as Excel or R to be able to construct and test a de-novo PSM themselves. INES is delivered to the user via a batch file. Once downloaded to the user’s hard drive, it interacts with the user via a portable version of R with web interactivity built in Shiny. INES requires absolutely no knowledge of R and the user does not need to have R or any of its dependences installed. Hence the user will deal with a standalone Shiny app. Inputs (digitalized survival curves, unit costs, posology, hazard ratios, discount rate) can be uploaded from a template spreadsheet. RESULTS: The INES application provides a seamlessly integrated package for estimating a set of parametric hazard functions for progression free and overall survival, selecting an appropriate function from this menu, and applying this as an input to a PSM to calculate mean costs and quality-adjusted life years. Examples are given that may serve as a tutorial. CONCLUSION: INES offers a rapid, flexible, robust and transparent tool for parametric survival analysis and calculating a PSM that can be used in many different contexts. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12962-023-00456-6. BioMed Central 2023-07-31 /pmc/articles/PMC10391963/ /pubmed/37525183 http://dx.doi.org/10.1186/s12962-023-00456-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Methodology
Gimeno-Ballester, Vicente
Perez-Troncoso, Daniel
Olry-Labry, Antonio
Epstein, David
INES: Interactive tool for construction and extrapolation of partitioned survival models
title INES: Interactive tool for construction and extrapolation of partitioned survival models
title_full INES: Interactive tool for construction and extrapolation of partitioned survival models
title_fullStr INES: Interactive tool for construction and extrapolation of partitioned survival models
title_full_unstemmed INES: Interactive tool for construction and extrapolation of partitioned survival models
title_short INES: Interactive tool for construction and extrapolation of partitioned survival models
title_sort ines: interactive tool for construction and extrapolation of partitioned survival models
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10391963/
https://www.ncbi.nlm.nih.gov/pubmed/37525183
http://dx.doi.org/10.1186/s12962-023-00456-6
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