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A chromosome-level genome assembly of a deep-sea starfish (Zoroaster cf. ophiactis)
Understanding of adaptation and evolution of organisms in the deep sea requires more genomic resources. Zoroaster cf. ophiactis is a sea star in the family Zoroasteridae occurring exclusively in the deep sea. In this study, a chromosome-level genome assembly for Z. cf. ophiactis was generated by com...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10394057/ https://www.ncbi.nlm.nih.gov/pubmed/37528102 http://dx.doi.org/10.1038/s41597-023-02397-4 |
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author | Liu, Jun Zhou, Yang Pu, Yujin Zhang, Haibin |
author_facet | Liu, Jun Zhou, Yang Pu, Yujin Zhang, Haibin |
author_sort | Liu, Jun |
collection | PubMed |
description | Understanding of adaptation and evolution of organisms in the deep sea requires more genomic resources. Zoroaster cf. ophiactis is a sea star in the family Zoroasteridae occurring exclusively in the deep sea. In this study, a chromosome-level genome assembly for Z. cf. ophiactis was generated by combining Nanopore long-read, Illumina short-read, and Hi-C sequencing data. The final assembly was 1,002.0 Mb in length, with a contig N50 of 376 Kb and a scaffold N50 of 40.4 Mb, and included 22 pseudo-chromosomes, covering 92.3% of the assembly. Completeness analysis evaluated with BUSCO revealed that 95.91% of the metazoan conserved genes were complete. Additionally, 39,426 protein-coding genes were annotated for this assembly. This chromosome-level genome assembly represents the first high-quality genome for the deep-sea Asteroidea, and will provide a valuable resource for future studies on evolution and adaptation of deep-sea echinoderms. |
format | Online Article Text |
id | pubmed-10394057 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103940572023-08-03 A chromosome-level genome assembly of a deep-sea starfish (Zoroaster cf. ophiactis) Liu, Jun Zhou, Yang Pu, Yujin Zhang, Haibin Sci Data Data Descriptor Understanding of adaptation and evolution of organisms in the deep sea requires more genomic resources. Zoroaster cf. ophiactis is a sea star in the family Zoroasteridae occurring exclusively in the deep sea. In this study, a chromosome-level genome assembly for Z. cf. ophiactis was generated by combining Nanopore long-read, Illumina short-read, and Hi-C sequencing data. The final assembly was 1,002.0 Mb in length, with a contig N50 of 376 Kb and a scaffold N50 of 40.4 Mb, and included 22 pseudo-chromosomes, covering 92.3% of the assembly. Completeness analysis evaluated with BUSCO revealed that 95.91% of the metazoan conserved genes were complete. Additionally, 39,426 protein-coding genes were annotated for this assembly. This chromosome-level genome assembly represents the first high-quality genome for the deep-sea Asteroidea, and will provide a valuable resource for future studies on evolution and adaptation of deep-sea echinoderms. Nature Publishing Group UK 2023-08-01 /pmc/articles/PMC10394057/ /pubmed/37528102 http://dx.doi.org/10.1038/s41597-023-02397-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Liu, Jun Zhou, Yang Pu, Yujin Zhang, Haibin A chromosome-level genome assembly of a deep-sea starfish (Zoroaster cf. ophiactis) |
title | A chromosome-level genome assembly of a deep-sea starfish (Zoroaster cf. ophiactis) |
title_full | A chromosome-level genome assembly of a deep-sea starfish (Zoroaster cf. ophiactis) |
title_fullStr | A chromosome-level genome assembly of a deep-sea starfish (Zoroaster cf. ophiactis) |
title_full_unstemmed | A chromosome-level genome assembly of a deep-sea starfish (Zoroaster cf. ophiactis) |
title_short | A chromosome-level genome assembly of a deep-sea starfish (Zoroaster cf. ophiactis) |
title_sort | chromosome-level genome assembly of a deep-sea starfish (zoroaster cf. ophiactis) |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10394057/ https://www.ncbi.nlm.nih.gov/pubmed/37528102 http://dx.doi.org/10.1038/s41597-023-02397-4 |
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