AtlasXplore: a web platform for visualizing and sharing spatial epigenome data

MOTIVATION: In recent years, a growing number of spatial epigenome datasets have been generated, presenting rich opportunities for studying the regulation mechanisms in solid tissue sections. However, visual exploration of these datasets requires extensive computational processing of raw data, prese...

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Detalles Bibliográficos
Autores principales: Barnett, Joshua, Sotudeh, Noori, Rao, Poorvi, Silverman, Jonah, Jafar, Tamara, Wang, Liya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10394123/
https://www.ncbi.nlm.nih.gov/pubmed/37478350
http://dx.doi.org/10.1093/bioinformatics/btad447
Descripción
Sumario:MOTIVATION: In recent years, a growing number of spatial epigenome datasets have been generated, presenting rich opportunities for studying the regulation mechanisms in solid tissue sections. However, visual exploration of these datasets requires extensive computational processing of raw data, presenting a challenge for researchers without advanced computational skills to fully explore and analyze such datasets. RESULTS: Here, we introduce AtlasXplore, a web-based platform that enables scientists to interactively navigate a growing collection of spatial epigenome data using an expanding set of tools. AVAILABILITY AND IMPLEMENTATION: https://web.atlasxomics.com

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