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TManual: Assistant for manually measuring length development in structures built by animals

Structures built by animals are extended phenotypes, and animal behavior can be better understood by recording the temporal development of structure construction. For most subterranean and wood‐boring animals, these structures consist of gallery systems, such as burrows made by mice, tunnel foraging...

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Autor principal: Mizumoto, Nobuaki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10394262/
https://www.ncbi.nlm.nih.gov/pubmed/37539068
http://dx.doi.org/10.1002/ece3.10394
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author Mizumoto, Nobuaki
author_facet Mizumoto, Nobuaki
author_sort Mizumoto, Nobuaki
collection PubMed
description Structures built by animals are extended phenotypes, and animal behavior can be better understood by recording the temporal development of structure construction. For most subterranean and wood‐boring animals, these structures consist of gallery systems, such as burrows made by mice, tunnel foraging by termites, and nest excavation in ants. Measurement of the length development of such structures is often performed manually. However, it is time‐consuming and cognitively costly to track length development in nested branching structures, hindering the quantitative determination of temporal development. Here, I introduce TManual, which aids the manual measurement of structure length development using a number of images. TManual provides a user interface to draw gallery structures and take over all other processes handling input datasets (e.g., zero‐adjustment, scaling the units, measuring the length, assigning gallery identities, and extracting network structures). Thus, users can focus on the measuring process without interruptions. As examples, I provide the results of the analysis of a dataset of tunnel construction by three termite species after successfully processing 1125 images in ~3 h. The output datasets clearly visualized the interspecific variation in tunneling speed and branching structures. Furthermore, I applied TManual to a complex gallery system by another termite species and extracted network structures. Measuring the lengths of objects from images is an essential task in biological observation. TManual helps users handle many images in a realistic time scale, enabling a comparative analysis across a wide array of species. TManual does not require programming skills and outputs a tidy data frame in CSV format. Therefore, it is suitable for any user who wants to perform image analysis for length measurements.
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spelling pubmed-103942622023-08-03 TManual: Assistant for manually measuring length development in structures built by animals Mizumoto, Nobuaki Ecol Evol Research Articles Structures built by animals are extended phenotypes, and animal behavior can be better understood by recording the temporal development of structure construction. For most subterranean and wood‐boring animals, these structures consist of gallery systems, such as burrows made by mice, tunnel foraging by termites, and nest excavation in ants. Measurement of the length development of such structures is often performed manually. However, it is time‐consuming and cognitively costly to track length development in nested branching structures, hindering the quantitative determination of temporal development. Here, I introduce TManual, which aids the manual measurement of structure length development using a number of images. TManual provides a user interface to draw gallery structures and take over all other processes handling input datasets (e.g., zero‐adjustment, scaling the units, measuring the length, assigning gallery identities, and extracting network structures). Thus, users can focus on the measuring process without interruptions. As examples, I provide the results of the analysis of a dataset of tunnel construction by three termite species after successfully processing 1125 images in ~3 h. The output datasets clearly visualized the interspecific variation in tunneling speed and branching structures. Furthermore, I applied TManual to a complex gallery system by another termite species and extracted network structures. Measuring the lengths of objects from images is an essential task in biological observation. TManual helps users handle many images in a realistic time scale, enabling a comparative analysis across a wide array of species. TManual does not require programming skills and outputs a tidy data frame in CSV format. Therefore, it is suitable for any user who wants to perform image analysis for length measurements. John Wiley and Sons Inc. 2023-08-01 /pmc/articles/PMC10394262/ /pubmed/37539068 http://dx.doi.org/10.1002/ece3.10394 Text en © 2023 The Author. Ecology and Evolution published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Mizumoto, Nobuaki
TManual: Assistant for manually measuring length development in structures built by animals
title TManual: Assistant for manually measuring length development in structures built by animals
title_full TManual: Assistant for manually measuring length development in structures built by animals
title_fullStr TManual: Assistant for manually measuring length development in structures built by animals
title_full_unstemmed TManual: Assistant for manually measuring length development in structures built by animals
title_short TManual: Assistant for manually measuring length development in structures built by animals
title_sort tmanual: assistant for manually measuring length development in structures built by animals
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10394262/
https://www.ncbi.nlm.nih.gov/pubmed/37539068
http://dx.doi.org/10.1002/ece3.10394
work_keys_str_mv AT mizumotonobuaki tmanualassistantformanuallymeasuringlengthdevelopmentinstructuresbuiltbyanimals