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Segmentation and counting of wheat spike grains based on deep learning and textural feature

BACKGROUND: Grain count is crucial to wheat yield composition and estimating yield parameters. However, traditional manual counting methods are time-consuming and labor-intensive. This study developed an advanced deep learning technique for the segmentation counting model of wheat grains. This model...

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Autores principales: Xu, Xin, Geng, Qing, Gao, Feng, Xiong, Du, Qiao, Hongbo, Ma, Xinming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10394929/
https://www.ncbi.nlm.nih.gov/pubmed/37528413
http://dx.doi.org/10.1186/s13007-023-01062-6
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author Xu, Xin
Geng, Qing
Gao, Feng
Xiong, Du
Qiao, Hongbo
Ma, Xinming
author_facet Xu, Xin
Geng, Qing
Gao, Feng
Xiong, Du
Qiao, Hongbo
Ma, Xinming
author_sort Xu, Xin
collection PubMed
description BACKGROUND: Grain count is crucial to wheat yield composition and estimating yield parameters. However, traditional manual counting methods are time-consuming and labor-intensive. This study developed an advanced deep learning technique for the segmentation counting model of wheat grains. This model has been rigorously tested on three distinct wheat varieties: ‘Bainong 307’, ‘Xinmai 26’, and ‘Jimai 336’, and it has achieved unprecedented predictive counting accuracy. METHOD: The images of wheat ears were taken with a smartphone at the late stage of wheat grain filling. We used image processing technology to preprocess and normalize the images to 480*480 pixels. A CBAM-HRNet wheat grain segmentation counting deep learning model based on the Convolutional Block Attention Module (CBAM) was constructed by combining deep learning, migration learning, and attention mechanism. Image processing algorithms and wheat grain texture features were used to build a grain counting and predictive counting model for wheat grains. RESULTS: The CBAM-HRNet model using the CBAM was the best for wheat grain segmentation. Its segmentation accuracy of 92.04%, the mean Intersection over Union (mIoU) of 85.21%, the category mean pixel accuracy (mPA) of 91.16%, and the recall rate of 91.16% demonstrate superior robustness compared to other models such as HRNet, PSPNet, DeeplabV3+ , and U-Net. Method I for spike count, which calculates twice the number of grains on one side of the spike to determine the total number of grains, demonstrates a coefficient of determination R(2) of 0.85, a mean absolute error (MAE) of 1.53, and a mean relative error (MRE) of 2.91. In contrast, Method II for spike count involves summing the number of grains on both sides to determine the total number of grains, demonstrating a coefficient of determination R(2) of 0.92, an MAE) of 1.15, and an MRE) of 2.09%. CONCLUSIONS: Image segmentation algorithm of the CBAM-HRNet wheat spike grain is a powerful solution that uses the CBAM to segment wheat spike grains and obtain richer semantic information. This model can effectively address the challenges of small target image segmentation and under-fitting problems in training. Additionally, the spike grain counting model can quickly and accurately predict the grain count of wheat, providing algorithmic support for efficient and intelligent wheat yield estimation.
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spelling pubmed-103949292023-08-03 Segmentation and counting of wheat spike grains based on deep learning and textural feature Xu, Xin Geng, Qing Gao, Feng Xiong, Du Qiao, Hongbo Ma, Xinming Plant Methods Methodology BACKGROUND: Grain count is crucial to wheat yield composition and estimating yield parameters. However, traditional manual counting methods are time-consuming and labor-intensive. This study developed an advanced deep learning technique for the segmentation counting model of wheat grains. This model has been rigorously tested on three distinct wheat varieties: ‘Bainong 307’, ‘Xinmai 26’, and ‘Jimai 336’, and it has achieved unprecedented predictive counting accuracy. METHOD: The images of wheat ears were taken with a smartphone at the late stage of wheat grain filling. We used image processing technology to preprocess and normalize the images to 480*480 pixels. A CBAM-HRNet wheat grain segmentation counting deep learning model based on the Convolutional Block Attention Module (CBAM) was constructed by combining deep learning, migration learning, and attention mechanism. Image processing algorithms and wheat grain texture features were used to build a grain counting and predictive counting model for wheat grains. RESULTS: The CBAM-HRNet model using the CBAM was the best for wheat grain segmentation. Its segmentation accuracy of 92.04%, the mean Intersection over Union (mIoU) of 85.21%, the category mean pixel accuracy (mPA) of 91.16%, and the recall rate of 91.16% demonstrate superior robustness compared to other models such as HRNet, PSPNet, DeeplabV3+ , and U-Net. Method I for spike count, which calculates twice the number of grains on one side of the spike to determine the total number of grains, demonstrates a coefficient of determination R(2) of 0.85, a mean absolute error (MAE) of 1.53, and a mean relative error (MRE) of 2.91. In contrast, Method II for spike count involves summing the number of grains on both sides to determine the total number of grains, demonstrating a coefficient of determination R(2) of 0.92, an MAE) of 1.15, and an MRE) of 2.09%. CONCLUSIONS: Image segmentation algorithm of the CBAM-HRNet wheat spike grain is a powerful solution that uses the CBAM to segment wheat spike grains and obtain richer semantic information. This model can effectively address the challenges of small target image segmentation and under-fitting problems in training. Additionally, the spike grain counting model can quickly and accurately predict the grain count of wheat, providing algorithmic support for efficient and intelligent wheat yield estimation. BioMed Central 2023-08-01 /pmc/articles/PMC10394929/ /pubmed/37528413 http://dx.doi.org/10.1186/s13007-023-01062-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Methodology
Xu, Xin
Geng, Qing
Gao, Feng
Xiong, Du
Qiao, Hongbo
Ma, Xinming
Segmentation and counting of wheat spike grains based on deep learning and textural feature
title Segmentation and counting of wheat spike grains based on deep learning and textural feature
title_full Segmentation and counting of wheat spike grains based on deep learning and textural feature
title_fullStr Segmentation and counting of wheat spike grains based on deep learning and textural feature
title_full_unstemmed Segmentation and counting of wheat spike grains based on deep learning and textural feature
title_short Segmentation and counting of wheat spike grains based on deep learning and textural feature
title_sort segmentation and counting of wheat spike grains based on deep learning and textural feature
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10394929/
https://www.ncbi.nlm.nih.gov/pubmed/37528413
http://dx.doi.org/10.1186/s13007-023-01062-6
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