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Blending citizen science with natural language processing and machine learning: Understanding the experience of living with multiple sclerosis
The emergence of new digital technologies has enabled a new way of doing research, including active collaboration with the public (‘citizen science’). Innovation in machine learning (ML) and natural language processing (NLP) has made automatic analysis of large-scale text data accessible to study in...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10395829/ https://www.ncbi.nlm.nih.gov/pubmed/37531365 http://dx.doi.org/10.1371/journal.pdig.0000305 |
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author | Haag, Christina Steinemann, Nina Chiavi, Deborah Kamm, Christian P. Sieber, Chloé Manjaly, Zina-Mary Horváth, Gábor Ajdacic-Gross, Vladeta Puhan, Milo Alan von Wyl, Viktor |
author_facet | Haag, Christina Steinemann, Nina Chiavi, Deborah Kamm, Christian P. Sieber, Chloé Manjaly, Zina-Mary Horváth, Gábor Ajdacic-Gross, Vladeta Puhan, Milo Alan von Wyl, Viktor |
author_sort | Haag, Christina |
collection | PubMed |
description | The emergence of new digital technologies has enabled a new way of doing research, including active collaboration with the public (‘citizen science’). Innovation in machine learning (ML) and natural language processing (NLP) has made automatic analysis of large-scale text data accessible to study individual perspectives in a convenient and efficient fashion. Here we blend citizen science with innovation in NLP and ML to examine (1) which categories of life events persons with multiple sclerosis (MS) perceived as central for their MS; and (2) associated emotions. We subsequently relate our results to standardized individual-level measures. Participants (n = 1039) took part in the ’My Life with MS’ study of the Swiss MS Registry which involved telling their story through self-selected life events using text descriptions and a semi-structured questionnaire. We performed topic modeling (‘latent Dirichlet allocation’) to identify high-level topics underlying the text descriptions. Using a pre-trained language model, we performed a fine-grained emotion analysis of the text descriptions. A topic modeling analysis of totally 4293 descriptions revealed eight underlying topics. Five topics are common in clinical research: ‘diagnosis’, ‘medication/treatment’, ‘relapse/child’, ‘rehabilitation/wheelchair’, and ‘injection/symptoms’. However, three topics, ‘work’, ‘birth/health’, and ‘partnership/MS’ represent domains that are of great relevance for participants but are generally understudied in MS research. While emotions were predominantly negative (sadness, anxiety), emotions linked to the topics ‘birth/health’ and ‘partnership/MS’ was also positive (joy). Designed in close collaboration with persons with MS, the ‘My Life with MS’ project explores the experience of living with the chronic disease of MS using NLP and ML. Our study thus contributes to the body of research demonstrating the potential of integrating citizen science with ML-driven NLP methods to explore the experience of living with a chronic condition. |
format | Online Article Text |
id | pubmed-10395829 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-103958292023-08-03 Blending citizen science with natural language processing and machine learning: Understanding the experience of living with multiple sclerosis Haag, Christina Steinemann, Nina Chiavi, Deborah Kamm, Christian P. Sieber, Chloé Manjaly, Zina-Mary Horváth, Gábor Ajdacic-Gross, Vladeta Puhan, Milo Alan von Wyl, Viktor PLOS Digit Health Research Article The emergence of new digital technologies has enabled a new way of doing research, including active collaboration with the public (‘citizen science’). Innovation in machine learning (ML) and natural language processing (NLP) has made automatic analysis of large-scale text data accessible to study individual perspectives in a convenient and efficient fashion. Here we blend citizen science with innovation in NLP and ML to examine (1) which categories of life events persons with multiple sclerosis (MS) perceived as central for their MS; and (2) associated emotions. We subsequently relate our results to standardized individual-level measures. Participants (n = 1039) took part in the ’My Life with MS’ study of the Swiss MS Registry which involved telling their story through self-selected life events using text descriptions and a semi-structured questionnaire. We performed topic modeling (‘latent Dirichlet allocation’) to identify high-level topics underlying the text descriptions. Using a pre-trained language model, we performed a fine-grained emotion analysis of the text descriptions. A topic modeling analysis of totally 4293 descriptions revealed eight underlying topics. Five topics are common in clinical research: ‘diagnosis’, ‘medication/treatment’, ‘relapse/child’, ‘rehabilitation/wheelchair’, and ‘injection/symptoms’. However, three topics, ‘work’, ‘birth/health’, and ‘partnership/MS’ represent domains that are of great relevance for participants but are generally understudied in MS research. While emotions were predominantly negative (sadness, anxiety), emotions linked to the topics ‘birth/health’ and ‘partnership/MS’ was also positive (joy). Designed in close collaboration with persons with MS, the ‘My Life with MS’ project explores the experience of living with the chronic disease of MS using NLP and ML. Our study thus contributes to the body of research demonstrating the potential of integrating citizen science with ML-driven NLP methods to explore the experience of living with a chronic condition. Public Library of Science 2023-08-02 /pmc/articles/PMC10395829/ /pubmed/37531365 http://dx.doi.org/10.1371/journal.pdig.0000305 Text en © 2023 Haag et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Haag, Christina Steinemann, Nina Chiavi, Deborah Kamm, Christian P. Sieber, Chloé Manjaly, Zina-Mary Horváth, Gábor Ajdacic-Gross, Vladeta Puhan, Milo Alan von Wyl, Viktor Blending citizen science with natural language processing and machine learning: Understanding the experience of living with multiple sclerosis |
title | Blending citizen science with natural language processing and machine learning: Understanding the experience of living with multiple sclerosis |
title_full | Blending citizen science with natural language processing and machine learning: Understanding the experience of living with multiple sclerosis |
title_fullStr | Blending citizen science with natural language processing and machine learning: Understanding the experience of living with multiple sclerosis |
title_full_unstemmed | Blending citizen science with natural language processing and machine learning: Understanding the experience of living with multiple sclerosis |
title_short | Blending citizen science with natural language processing and machine learning: Understanding the experience of living with multiple sclerosis |
title_sort | blending citizen science with natural language processing and machine learning: understanding the experience of living with multiple sclerosis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10395829/ https://www.ncbi.nlm.nih.gov/pubmed/37531365 http://dx.doi.org/10.1371/journal.pdig.0000305 |
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