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Genomic insight into domestication of rubber tree

Understanding the genetic basis of rubber tree (Hevea brasiliensis) domestication is crucial for further improving natural rubber production to meet its increasing demand worldwide. Here we provide a high-quality H. brasiliensis genome assembly (1.58 Gb, contig N50 of 11.21 megabases), present a map...

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Autores principales: Chao, Jinquan, Wu, Shaohua, Shi, Minjing, Xu, Xia, Gao, Qiang, Du, Huilong, Gao, Bin, Guo, Dong, Yang, Shuguang, Zhang, Shixin, Li, Yan, Fan, Xiuli, Hai, Chunyan, Kou, Liquan, Zhang, Jiao, Wang, Zhiwei, Xue, Wenbo, Xu, Jiang, Deng, Xiaomin, Huang, Xiao, Gao, Xinsheng, Zhang, Xiaofei, Hu, Yanshi, Zeng, Xia, Li, Weiguo, Zhang, Liangsheng, Peng, Shiqing, Wu, Jilin, Hao, Bingzhong, Wang, Xuchu, Yu, Hong, Li, Jiayang, Liang, Chengzhi, Tian, Wei-Min
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10397287/
https://www.ncbi.nlm.nih.gov/pubmed/37532727
http://dx.doi.org/10.1038/s41467-023-40304-y
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author Chao, Jinquan
Wu, Shaohua
Shi, Minjing
Xu, Xia
Gao, Qiang
Du, Huilong
Gao, Bin
Guo, Dong
Yang, Shuguang
Zhang, Shixin
Li, Yan
Fan, Xiuli
Hai, Chunyan
Kou, Liquan
Zhang, Jiao
Wang, Zhiwei
Li, Yan
Xue, Wenbo
Xu, Jiang
Deng, Xiaomin
Huang, Xiao
Gao, Xinsheng
Zhang, Xiaofei
Hu, Yanshi
Zeng, Xia
Li, Weiguo
Zhang, Liangsheng
Peng, Shiqing
Wu, Jilin
Hao, Bingzhong
Wang, Xuchu
Yu, Hong
Li, Jiayang
Liang, Chengzhi
Tian, Wei-Min
author_facet Chao, Jinquan
Wu, Shaohua
Shi, Minjing
Xu, Xia
Gao, Qiang
Du, Huilong
Gao, Bin
Guo, Dong
Yang, Shuguang
Zhang, Shixin
Li, Yan
Fan, Xiuli
Hai, Chunyan
Kou, Liquan
Zhang, Jiao
Wang, Zhiwei
Li, Yan
Xue, Wenbo
Xu, Jiang
Deng, Xiaomin
Huang, Xiao
Gao, Xinsheng
Zhang, Xiaofei
Hu, Yanshi
Zeng, Xia
Li, Weiguo
Zhang, Liangsheng
Peng, Shiqing
Wu, Jilin
Hao, Bingzhong
Wang, Xuchu
Yu, Hong
Li, Jiayang
Liang, Chengzhi
Tian, Wei-Min
author_sort Chao, Jinquan
collection PubMed
description Understanding the genetic basis of rubber tree (Hevea brasiliensis) domestication is crucial for further improving natural rubber production to meet its increasing demand worldwide. Here we provide a high-quality H. brasiliensis genome assembly (1.58 Gb, contig N50 of 11.21 megabases), present a map of genome variations by resequencing 335 accessions and reveal domestication-related molecular signals and a major domestication trait, the higher number of laticifer rings. We further show that HbPSK5, encoding the small-peptide hormone phytosulfokine (PSK), is a key domestication gene and closely correlated with the major domestication trait. The transcriptional activation of HbPSK5 by myelocytomatosis (MYC) members links PSK signaling to jasmonates in regulating the laticifer differentiation in rubber tree. Heterologous overexpression of HbPSK5 in Russian dandelion (Taraxacum kok-saghyz) can increase rubber content by promoting laticifer formation. Our results provide an insight into target genes for improving rubber tree and accelerating the domestication of other rubber-producing plants.
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spelling pubmed-103972872023-08-04 Genomic insight into domestication of rubber tree Chao, Jinquan Wu, Shaohua Shi, Minjing Xu, Xia Gao, Qiang Du, Huilong Gao, Bin Guo, Dong Yang, Shuguang Zhang, Shixin Li, Yan Fan, Xiuli Hai, Chunyan Kou, Liquan Zhang, Jiao Wang, Zhiwei Li, Yan Xue, Wenbo Xu, Jiang Deng, Xiaomin Huang, Xiao Gao, Xinsheng Zhang, Xiaofei Hu, Yanshi Zeng, Xia Li, Weiguo Zhang, Liangsheng Peng, Shiqing Wu, Jilin Hao, Bingzhong Wang, Xuchu Yu, Hong Li, Jiayang Liang, Chengzhi Tian, Wei-Min Nat Commun Article Understanding the genetic basis of rubber tree (Hevea brasiliensis) domestication is crucial for further improving natural rubber production to meet its increasing demand worldwide. Here we provide a high-quality H. brasiliensis genome assembly (1.58 Gb, contig N50 of 11.21 megabases), present a map of genome variations by resequencing 335 accessions and reveal domestication-related molecular signals and a major domestication trait, the higher number of laticifer rings. We further show that HbPSK5, encoding the small-peptide hormone phytosulfokine (PSK), is a key domestication gene and closely correlated with the major domestication trait. The transcriptional activation of HbPSK5 by myelocytomatosis (MYC) members links PSK signaling to jasmonates in regulating the laticifer differentiation in rubber tree. Heterologous overexpression of HbPSK5 in Russian dandelion (Taraxacum kok-saghyz) can increase rubber content by promoting laticifer formation. Our results provide an insight into target genes for improving rubber tree and accelerating the domestication of other rubber-producing plants. Nature Publishing Group UK 2023-08-02 /pmc/articles/PMC10397287/ /pubmed/37532727 http://dx.doi.org/10.1038/s41467-023-40304-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Chao, Jinquan
Wu, Shaohua
Shi, Minjing
Xu, Xia
Gao, Qiang
Du, Huilong
Gao, Bin
Guo, Dong
Yang, Shuguang
Zhang, Shixin
Li, Yan
Fan, Xiuli
Hai, Chunyan
Kou, Liquan
Zhang, Jiao
Wang, Zhiwei
Li, Yan
Xue, Wenbo
Xu, Jiang
Deng, Xiaomin
Huang, Xiao
Gao, Xinsheng
Zhang, Xiaofei
Hu, Yanshi
Zeng, Xia
Li, Weiguo
Zhang, Liangsheng
Peng, Shiqing
Wu, Jilin
Hao, Bingzhong
Wang, Xuchu
Yu, Hong
Li, Jiayang
Liang, Chengzhi
Tian, Wei-Min
Genomic insight into domestication of rubber tree
title Genomic insight into domestication of rubber tree
title_full Genomic insight into domestication of rubber tree
title_fullStr Genomic insight into domestication of rubber tree
title_full_unstemmed Genomic insight into domestication of rubber tree
title_short Genomic insight into domestication of rubber tree
title_sort genomic insight into domestication of rubber tree
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10397287/
https://www.ncbi.nlm.nih.gov/pubmed/37532727
http://dx.doi.org/10.1038/s41467-023-40304-y
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