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Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae)
In this study, we determined the chloroplast genome sequence of the Austral king fern, Todea barbara (L.) Moore. The plastome of T. barbara is a typical circular form composed of 144,208 bp with two inverted repeats (IRs; 10,442 bp), a large single copy (LSC; 101,059 bp), and a small single copy (SS...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10399469/ https://www.ncbi.nlm.nih.gov/pubmed/37545552 http://dx.doi.org/10.1080/23802359.2023.2238938 |
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author | Kim, Hyoung Tae Kim, Jung Sung |
author_facet | Kim, Hyoung Tae Kim, Jung Sung |
author_sort | Kim, Hyoung Tae |
collection | PubMed |
description | In this study, we determined the chloroplast genome sequence of the Austral king fern, Todea barbara (L.) Moore. The plastome of T. barbara is a typical circular form composed of 144,208 bp with two inverted repeats (IRs; 10,442 bp), a large single copy (LSC; 101,059 bp), and a small single copy (SSC; 22,265 bp). The complete sequence comprises 131 genes, namely 85 protein-coding genes, eight ribosomal RNAs, and 38 transfer RNAs. The guanine–cytosine (GC) content of the genome was found to be 39.9%. Additionally, U-to-C RNA editing sites were identified in eight genes: atpE, chlB, clpP, matK, rpl20, rpoB, rpoC1, and rpoC2. Phylogenetic analysis using 85 coding gene sequences revealed that the genera Todea and Osmunda form a clade and that the genus Osmundastrum is a sister genus to both. |
format | Online Article Text |
id | pubmed-10399469 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-103994692023-08-04 Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae) Kim, Hyoung Tae Kim, Jung Sung Mitochondrial DNA B Resour Plastome Report In this study, we determined the chloroplast genome sequence of the Austral king fern, Todea barbara (L.) Moore. The plastome of T. barbara is a typical circular form composed of 144,208 bp with two inverted repeats (IRs; 10,442 bp), a large single copy (LSC; 101,059 bp), and a small single copy (SSC; 22,265 bp). The complete sequence comprises 131 genes, namely 85 protein-coding genes, eight ribosomal RNAs, and 38 transfer RNAs. The guanine–cytosine (GC) content of the genome was found to be 39.9%. Additionally, U-to-C RNA editing sites were identified in eight genes: atpE, chlB, clpP, matK, rpl20, rpoB, rpoC1, and rpoC2. Phylogenetic analysis using 85 coding gene sequences revealed that the genera Todea and Osmunda form a clade and that the genus Osmundastrum is a sister genus to both. Taylor & Francis 2023-08-02 /pmc/articles/PMC10399469/ /pubmed/37545552 http://dx.doi.org/10.1080/23802359.2023.2238938 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Plastome Report Kim, Hyoung Tae Kim, Jung Sung Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae) |
title | Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae) |
title_full | Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae) |
title_fullStr | Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae) |
title_full_unstemmed | Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae) |
title_short | Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae) |
title_sort | complete chloroplast genome of austral king fern todea barbara (l.) moore (osmundaceae) |
topic | Plastome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10399469/ https://www.ncbi.nlm.nih.gov/pubmed/37545552 http://dx.doi.org/10.1080/23802359.2023.2238938 |
work_keys_str_mv | AT kimhyoungtae completechloroplastgenomeofaustralkingferntodeabarbaralmooreosmundaceae AT kimjungsung completechloroplastgenomeofaustralkingferntodeabarbaralmooreosmundaceae |