Cargando…

Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae)

In this study, we determined the chloroplast genome sequence of the Austral king fern, Todea barbara (L.) Moore. The plastome of T. barbara is a typical circular form composed of 144,208 bp with two inverted repeats (IRs; 10,442 bp), a large single copy (LSC; 101,059 bp), and a small single copy (SS...

Descripción completa

Detalles Bibliográficos
Autores principales: Kim, Hyoung Tae, Kim, Jung Sung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10399469/
https://www.ncbi.nlm.nih.gov/pubmed/37545552
http://dx.doi.org/10.1080/23802359.2023.2238938
_version_ 1785084252645228544
author Kim, Hyoung Tae
Kim, Jung Sung
author_facet Kim, Hyoung Tae
Kim, Jung Sung
author_sort Kim, Hyoung Tae
collection PubMed
description In this study, we determined the chloroplast genome sequence of the Austral king fern, Todea barbara (L.) Moore. The plastome of T. barbara is a typical circular form composed of 144,208 bp with two inverted repeats (IRs; 10,442 bp), a large single copy (LSC; 101,059 bp), and a small single copy (SSC; 22,265 bp). The complete sequence comprises 131 genes, namely 85 protein-coding genes, eight ribosomal RNAs, and 38 transfer RNAs. The guanine–cytosine (GC) content of the genome was found to be 39.9%. Additionally, U-to-C RNA editing sites were identified in eight genes: atpE, chlB, clpP, matK, rpl20, rpoB, rpoC1, and rpoC2. Phylogenetic analysis using 85 coding gene sequences revealed that the genera Todea and Osmunda form a clade and that the genus Osmundastrum is a sister genus to both.
format Online
Article
Text
id pubmed-10399469
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-103994692023-08-04 Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae) Kim, Hyoung Tae Kim, Jung Sung Mitochondrial DNA B Resour Plastome Report In this study, we determined the chloroplast genome sequence of the Austral king fern, Todea barbara (L.) Moore. The plastome of T. barbara is a typical circular form composed of 144,208 bp with two inverted repeats (IRs; 10,442 bp), a large single copy (LSC; 101,059 bp), and a small single copy (SSC; 22,265 bp). The complete sequence comprises 131 genes, namely 85 protein-coding genes, eight ribosomal RNAs, and 38 transfer RNAs. The guanine–cytosine (GC) content of the genome was found to be 39.9%. Additionally, U-to-C RNA editing sites were identified in eight genes: atpE, chlB, clpP, matK, rpl20, rpoB, rpoC1, and rpoC2. Phylogenetic analysis using 85 coding gene sequences revealed that the genera Todea and Osmunda form a clade and that the genus Osmundastrum is a sister genus to both. Taylor & Francis 2023-08-02 /pmc/articles/PMC10399469/ /pubmed/37545552 http://dx.doi.org/10.1080/23802359.2023.2238938 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Plastome Report
Kim, Hyoung Tae
Kim, Jung Sung
Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae)
title Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae)
title_full Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae)
title_fullStr Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae)
title_full_unstemmed Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae)
title_short Complete chloroplast genome of Austral king fern Todea barbara (L.) Moore (Osmundaceae)
title_sort complete chloroplast genome of austral king fern todea barbara (l.) moore (osmundaceae)
topic Plastome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10399469/
https://www.ncbi.nlm.nih.gov/pubmed/37545552
http://dx.doi.org/10.1080/23802359.2023.2238938
work_keys_str_mv AT kimhyoungtae completechloroplastgenomeofaustralkingferntodeabarbaralmooreosmundaceae
AT kimjungsung completechloroplastgenomeofaustralkingferntodeabarbaralmooreosmundaceae