Cargando…

Functional annotation of proteins for signaling network inference in non-model species

Molecular biology aims to understand cellular responses and regulatory dynamics in complex biological systems. However, these studies remain challenging in non-model species due to poor functional annotation of regulatory proteins. To overcome this limitation, we develop a multi-layer neural network...

Descripción completa

Detalles Bibliográficos
Autores principales:	Van den Broeck, Lisa, Bhosale, Dinesh Kiran, Song, Kuncheng, Fonseca de Lima, Cássio Flavio, Ashley, Michael, Zhu, Tingting, Zhu, Shanshuo, Van De Cotte, Brigitte, Neyt, Pia, Ortiz, Anna C., Sikes, Tiffany R., Aper, Jonas, Lootens, Peter, Locke, Anna M., De Smet, Ive, Sozzani, Rosangela
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10400656/ https://www.ncbi.nlm.nih.gov/pubmed/37537196 http://dx.doi.org/10.1038/s41467-023-40365-z

Ejemplares similares

Early mannitol-triggered changes in the Arabidopsis leaf (phospho)proteome reveal growth regulators
por: Nikonorova, Natalia, et al.
Publicado: (2018)

The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators
por: Nikonorova, Natalia, et al.
Publicado: (2021)

Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms
por: Vu, Lam Dai, et al.
Publicado: (2018)

A Comprehensive Phylogenetic Analysis of the MAP4K Family in the Green Lineage
por: Pan, Lixia, et al.
Publicado: (2021)

When drought meets heat – a plant omics perspective
por: Xu, Xiangyu, et al.
Publicado: (2023)

Modulation of Arabidopsis and monocot root architecture by CLAVATA3/EMBRYO SURROUNDING REGION 26 peptide
por: Czyzewicz, Nathan, et al.
Publicado: (2015)

Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling
por: Van den Broeck, Lisa, et al.
Publicado: (2020)

Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation
por: Thomas, Hannah, et al.
Publicado: (2021)

The membrane-localized protein kinase MAP4K4/TOT3 regulates thermomorphogenesis
por: Vu, Lam Dai, et al.
Publicado: (2021)

RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation
por: Murphy, Evan, et al.
Publicado: (2016)

Histidine kinase inhibitors impair shoot regeneration in Arabidopsis thaliana via cytokinin signaling and SAM patterning determinants
por: Lardon, Robin, et al.
Publicado: (2022)

Plant peptides – taking them to the next level
por: De Coninck, Barbara, et al.
Publicado: (2016)

Localised ABA signalling mediates root growth plasticity
por: Ding, Zhaojun, et al.
Publicado: (2013)

The Arabidopsis thaliana CLAVATA3/EMBRYO-SURROUNDING REGION 26 (CLE26) peptide is able to alter root architecture of Solanum lycopersicum and Brassica napus
por: Czyzewicz, Nathan, et al.
Publicado: (2015)

Expanding the Mitogen-Activated Protein Kinase (MAPK) Universe: An Update on MAP4Ks
por: Pan, Lixia, et al.
Publicado: (2020)

The Collaboration Between Art History and Genetics – An Unlikely Marriage of Disciplines
por: De Smet, Ive, et al.
Publicado: (2021)

Editorial: #ArtGenetics - looking at art to trace plant evolution
por: De Smet, Ive, et al.
Publicado: (2023)

Response of a Diverse European Soybean Collection to “Short Duration” and “Long Duration” Drought Stress
por: Saleem, Aamir, et al.
Publicado: (2022)

Tissue Regeneration with Hydrogel Encapsulation: A Review of Developments in Plants and Animals
por: Krishnamoorthy, Srikumar, et al.
Publicado: (2021)

Phosphoproteomics-based peptide ligand-receptor kinase pairing. Commentary on: “A peptide hormone and its receptor protein kinase regulate plant cell expansion”
por: Stes, Elisabeth, et al.
Publicado: (2015)

CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis
por: Roberts, Ianto, et al.
Publicado: (2016)

Warm temperature triggers JOX and ST2A-mediated jasmonate catabolism to promote plant growth
por: Zhu, Tingting, et al.
Publicado: (2021)

Experimental data and computational modeling link auxin gradient and development in the Arabidopsis root
por: Clark, Natalie M., et al.
Publicado: (2014)

High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype
por: Sozzani, Rosangela, et al.
Publicado: (2011)

A phylogenetic approach to study the origin and evolution of the CRINKLY4 family
por: Nikonorova, Natalia, et al.
Publicado: (2015)

Proteome-wide cellular thermal shift assay reveals unexpected cross-talk between brassinosteroid and auxin signaling
por: Lu, Qing, et al.
Publicado: (2022)

Proteome Profiling of Wheat Shoots from Different Cultivars
por: Vu, Lam Dai, et al.
Publicado: (2017)

RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry
por: Adhikari, Tika B., et al.
Publicado: (2022)

A hybrid model connecting regulatory interactions with stem cell divisions in the root
por: Van den Broeck, Lisa, et al.
Publicado: (2021)

Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in N. benthamiana Infected Plants at the Early Stage of the Infection
por: Wrzesińska, Barbara, et al.
Publicado: (2018)

Multiple cellular compartments engagement in Nicotiana benthamiana-peanut stunt virus-satRNA interactions revealed by systems biology approach
por: Wrzesińska, Barbara, et al.
Publicado: (2021)

Unravelling the pharmacokinetics of aflatoxin B1: In vitro determination of Michaelis–Menten constants, intrinsic clearance and the metabolic contribution of CYP1A2 and CYP3A4 in pooled human liver microsomes
por: Lootens, Orphélie, et al.
Publicado: (2022)

Possible Mechanisms of the Interplay between Drugs and Mycotoxins—Is There a Possible Impact?
por: Lootens, Orphélie, et al.
Publicado: (2022)

A cost-utility analysis of transcatheter aortic valve implantation in Belgium: focusing on a well-defined and identifiable population
por: Neyt, Mattias, et al.
Publicado: (2012)

The CEP5 Peptide Promotes Abiotic Stress Tolerance, As Revealed by Quantitative Proteomics, and Attenuates the AUX/IAA Equilibrium in Arabidopsis
por: Smith, Stephanie, et al.
Publicado: (2020)

Building a Human Physiologically Based Pharmacokinetic Model for Aflatoxin B1 to Simulate Interactions with Drugs
por: Lootens, Orphélie, et al.
Publicado: (2023)

DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW
por: Smet, Wouter, et al.
Publicado: (2019)

Safety of percutaneous aortic valve insertion. A systematic review
por: Van Brabandt, Hans, et al.
Publicado: (2009)

Clinical utility of automatic phenotype annotation in unstructured clinical notes: intensive care unit use
por: Zhang, Jingqing, et al.
Publicado: (2022)

Lower Extremity Near-infrared Spectroscopy After Popliteal Block For Orthopaedic Foot Surgery
por: Van de Velde, Stijn, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_h02cuunl00ucscea2gpq7hmvb4