Cargando…

An expandable, modular de novo protein platform for precision redox engineering

The electron-conducting circuitry of life represents an as-yet untapped resource of exquisite, nanoscale biomolecular engineering. Here, we report the characterization and structure of a de novo diheme “maquette” protein, 4D2, which we subsequently use to create an expanded, modular platform for hem...

Descripción completa

Detalles Bibliográficos
Autores principales: Hutchins, George H., Noble, Claire E. M., Bunzel, H. Adrian, Williams, Christopher, Dubiel, Paulina, Yadav, Sathish K. N., Molinaro, Paul M., Barringer, Rob, Blackburn, Hector, Hardy, Benjamin J., Parnell, Alice E., Landau, Charles, Race, Paul R., Oliver, Thomas A. A., Koder, Ronald L., Crump, Matthew P., Schaffitzel, Christiane, Oliveira, A. Sofia F., Mulholland, Adrian J., Anderson, J. L. Ross
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10400981/
https://www.ncbi.nlm.nih.gov/pubmed/37487099
http://dx.doi.org/10.1073/pnas.2306046120
_version_ 1785084558722465792
author Hutchins, George H.
Noble, Claire E. M.
Bunzel, H. Adrian
Williams, Christopher
Dubiel, Paulina
Yadav, Sathish K. N.
Molinaro, Paul M.
Barringer, Rob
Blackburn, Hector
Hardy, Benjamin J.
Parnell, Alice E.
Landau, Charles
Race, Paul R.
Oliver, Thomas A. A.
Koder, Ronald L.
Crump, Matthew P.
Schaffitzel, Christiane
Oliveira, A. Sofia F.
Mulholland, Adrian J.
Anderson, J. L. Ross
author_facet Hutchins, George H.
Noble, Claire E. M.
Bunzel, H. Adrian
Williams, Christopher
Dubiel, Paulina
Yadav, Sathish K. N.
Molinaro, Paul M.
Barringer, Rob
Blackburn, Hector
Hardy, Benjamin J.
Parnell, Alice E.
Landau, Charles
Race, Paul R.
Oliver, Thomas A. A.
Koder, Ronald L.
Crump, Matthew P.
Schaffitzel, Christiane
Oliveira, A. Sofia F.
Mulholland, Adrian J.
Anderson, J. L. Ross
author_sort Hutchins, George H.
collection PubMed
description The electron-conducting circuitry of life represents an as-yet untapped resource of exquisite, nanoscale biomolecular engineering. Here, we report the characterization and structure of a de novo diheme “maquette” protein, 4D2, which we subsequently use to create an expanded, modular platform for heme protein design. A well-folded monoheme variant was created by computational redesign, which was then utilized for the experimental validation of continuum electrostatic redox potential calculations. This demonstrates how fundamental biophysical properties can be predicted and fine-tuned. 4D2 was then extended into a tetraheme helical bundle, representing a 7 nm molecular wire. Despite a molecular weight of only 24 kDa, electron cryomicroscopy illustrated a remarkable level of detail, indicating the positioning of the secondary structure and the heme cofactors. This robust, expressible, highly thermostable and readily designable modular platform presents a valuable resource for redox protein design and the future construction of artificial electron-conducting circuitry.
format Online
Article
Text
id pubmed-10400981
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher National Academy of Sciences
record_format MEDLINE/PubMed
spelling pubmed-104009812023-08-05 An expandable, modular de novo protein platform for precision redox engineering Hutchins, George H. Noble, Claire E. M. Bunzel, H. Adrian Williams, Christopher Dubiel, Paulina Yadav, Sathish K. N. Molinaro, Paul M. Barringer, Rob Blackburn, Hector Hardy, Benjamin J. Parnell, Alice E. Landau, Charles Race, Paul R. Oliver, Thomas A. A. Koder, Ronald L. Crump, Matthew P. Schaffitzel, Christiane Oliveira, A. Sofia F. Mulholland, Adrian J. Anderson, J. L. Ross Proc Natl Acad Sci U S A Biological Sciences The electron-conducting circuitry of life represents an as-yet untapped resource of exquisite, nanoscale biomolecular engineering. Here, we report the characterization and structure of a de novo diheme “maquette” protein, 4D2, which we subsequently use to create an expanded, modular platform for heme protein design. A well-folded monoheme variant was created by computational redesign, which was then utilized for the experimental validation of continuum electrostatic redox potential calculations. This demonstrates how fundamental biophysical properties can be predicted and fine-tuned. 4D2 was then extended into a tetraheme helical bundle, representing a 7 nm molecular wire. Despite a molecular weight of only 24 kDa, electron cryomicroscopy illustrated a remarkable level of detail, indicating the positioning of the secondary structure and the heme cofactors. This robust, expressible, highly thermostable and readily designable modular platform presents a valuable resource for redox protein design and the future construction of artificial electron-conducting circuitry. National Academy of Sciences 2023-07-24 2023-08-01 /pmc/articles/PMC10400981/ /pubmed/37487099 http://dx.doi.org/10.1073/pnas.2306046120 Text en Copyright © 2023 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Biological Sciences
Hutchins, George H.
Noble, Claire E. M.
Bunzel, H. Adrian
Williams, Christopher
Dubiel, Paulina
Yadav, Sathish K. N.
Molinaro, Paul M.
Barringer, Rob
Blackburn, Hector
Hardy, Benjamin J.
Parnell, Alice E.
Landau, Charles
Race, Paul R.
Oliver, Thomas A. A.
Koder, Ronald L.
Crump, Matthew P.
Schaffitzel, Christiane
Oliveira, A. Sofia F.
Mulholland, Adrian J.
Anderson, J. L. Ross
An expandable, modular de novo protein platform for precision redox engineering
title An expandable, modular de novo protein platform for precision redox engineering
title_full An expandable, modular de novo protein platform for precision redox engineering
title_fullStr An expandable, modular de novo protein platform for precision redox engineering
title_full_unstemmed An expandable, modular de novo protein platform for precision redox engineering
title_short An expandable, modular de novo protein platform for precision redox engineering
title_sort expandable, modular de novo protein platform for precision redox engineering
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10400981/
https://www.ncbi.nlm.nih.gov/pubmed/37487099
http://dx.doi.org/10.1073/pnas.2306046120
work_keys_str_mv AT hutchinsgeorgeh anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT nobleclaireem anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT bunzelhadrian anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT williamschristopher anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT dubielpaulina anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT yadavsathishkn anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT molinaropaulm anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT barringerrob anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT blackburnhector anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT hardybenjaminj anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT parnellalicee anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT landaucharles anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT racepaulr anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT oliverthomasaa anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT koderronaldl anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT crumpmatthewp anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT schaffitzelchristiane anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT oliveiraasofiaf anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT mulhollandadrianj anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT andersonjlross anexpandablemodulardenovoproteinplatformforprecisionredoxengineering
AT hutchinsgeorgeh expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT nobleclaireem expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT bunzelhadrian expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT williamschristopher expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT dubielpaulina expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT yadavsathishkn expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT molinaropaulm expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT barringerrob expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT blackburnhector expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT hardybenjaminj expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT parnellalicee expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT landaucharles expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT racepaulr expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT oliverthomasaa expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT koderronaldl expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT crumpmatthewp expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT schaffitzelchristiane expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT oliveiraasofiaf expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT mulhollandadrianj expandablemodulardenovoproteinplatformforprecisionredoxengineering
AT andersonjlross expandablemodulardenovoproteinplatformforprecisionredoxengineering