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An expandable, modular de novo protein platform for precision redox engineering
The electron-conducting circuitry of life represents an as-yet untapped resource of exquisite, nanoscale biomolecular engineering. Here, we report the characterization and structure of a de novo diheme “maquette” protein, 4D2, which we subsequently use to create an expanded, modular platform for hem...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10400981/ https://www.ncbi.nlm.nih.gov/pubmed/37487099 http://dx.doi.org/10.1073/pnas.2306046120 |
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author | Hutchins, George H. Noble, Claire E. M. Bunzel, H. Adrian Williams, Christopher Dubiel, Paulina Yadav, Sathish K. N. Molinaro, Paul M. Barringer, Rob Blackburn, Hector Hardy, Benjamin J. Parnell, Alice E. Landau, Charles Race, Paul R. Oliver, Thomas A. A. Koder, Ronald L. Crump, Matthew P. Schaffitzel, Christiane Oliveira, A. Sofia F. Mulholland, Adrian J. Anderson, J. L. Ross |
author_facet | Hutchins, George H. Noble, Claire E. M. Bunzel, H. Adrian Williams, Christopher Dubiel, Paulina Yadav, Sathish K. N. Molinaro, Paul M. Barringer, Rob Blackburn, Hector Hardy, Benjamin J. Parnell, Alice E. Landau, Charles Race, Paul R. Oliver, Thomas A. A. Koder, Ronald L. Crump, Matthew P. Schaffitzel, Christiane Oliveira, A. Sofia F. Mulholland, Adrian J. Anderson, J. L. Ross |
author_sort | Hutchins, George H. |
collection | PubMed |
description | The electron-conducting circuitry of life represents an as-yet untapped resource of exquisite, nanoscale biomolecular engineering. Here, we report the characterization and structure of a de novo diheme “maquette” protein, 4D2, which we subsequently use to create an expanded, modular platform for heme protein design. A well-folded monoheme variant was created by computational redesign, which was then utilized for the experimental validation of continuum electrostatic redox potential calculations. This demonstrates how fundamental biophysical properties can be predicted and fine-tuned. 4D2 was then extended into a tetraheme helical bundle, representing a 7 nm molecular wire. Despite a molecular weight of only 24 kDa, electron cryomicroscopy illustrated a remarkable level of detail, indicating the positioning of the secondary structure and the heme cofactors. This robust, expressible, highly thermostable and readily designable modular platform presents a valuable resource for redox protein design and the future construction of artificial electron-conducting circuitry. |
format | Online Article Text |
id | pubmed-10400981 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-104009812023-08-05 An expandable, modular de novo protein platform for precision redox engineering Hutchins, George H. Noble, Claire E. M. Bunzel, H. Adrian Williams, Christopher Dubiel, Paulina Yadav, Sathish K. N. Molinaro, Paul M. Barringer, Rob Blackburn, Hector Hardy, Benjamin J. Parnell, Alice E. Landau, Charles Race, Paul R. Oliver, Thomas A. A. Koder, Ronald L. Crump, Matthew P. Schaffitzel, Christiane Oliveira, A. Sofia F. Mulholland, Adrian J. Anderson, J. L. Ross Proc Natl Acad Sci U S A Biological Sciences The electron-conducting circuitry of life represents an as-yet untapped resource of exquisite, nanoscale biomolecular engineering. Here, we report the characterization and structure of a de novo diheme “maquette” protein, 4D2, which we subsequently use to create an expanded, modular platform for heme protein design. A well-folded monoheme variant was created by computational redesign, which was then utilized for the experimental validation of continuum electrostatic redox potential calculations. This demonstrates how fundamental biophysical properties can be predicted and fine-tuned. 4D2 was then extended into a tetraheme helical bundle, representing a 7 nm molecular wire. Despite a molecular weight of only 24 kDa, electron cryomicroscopy illustrated a remarkable level of detail, indicating the positioning of the secondary structure and the heme cofactors. This robust, expressible, highly thermostable and readily designable modular platform presents a valuable resource for redox protein design and the future construction of artificial electron-conducting circuitry. National Academy of Sciences 2023-07-24 2023-08-01 /pmc/articles/PMC10400981/ /pubmed/37487099 http://dx.doi.org/10.1073/pnas.2306046120 Text en Copyright © 2023 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Biological Sciences Hutchins, George H. Noble, Claire E. M. Bunzel, H. Adrian Williams, Christopher Dubiel, Paulina Yadav, Sathish K. N. Molinaro, Paul M. Barringer, Rob Blackburn, Hector Hardy, Benjamin J. Parnell, Alice E. Landau, Charles Race, Paul R. Oliver, Thomas A. A. Koder, Ronald L. Crump, Matthew P. Schaffitzel, Christiane Oliveira, A. Sofia F. Mulholland, Adrian J. Anderson, J. L. Ross An expandable, modular de novo protein platform for precision redox engineering |
title | An expandable, modular de novo protein platform for precision redox engineering |
title_full | An expandable, modular de novo protein platform for precision redox engineering |
title_fullStr | An expandable, modular de novo protein platform for precision redox engineering |
title_full_unstemmed | An expandable, modular de novo protein platform for precision redox engineering |
title_short | An expandable, modular de novo protein platform for precision redox engineering |
title_sort | expandable, modular de novo protein platform for precision redox engineering |
topic | Biological Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10400981/ https://www.ncbi.nlm.nih.gov/pubmed/37487099 http://dx.doi.org/10.1073/pnas.2306046120 |
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