Cargando…
Oracle selection provides insight into how far off practice is from Utopia in plant breeding
Since the introduction of genomic selection in plant breeding, high genetic gains have been realized in different plant breeding programs. Various methods based on genomic estimated breeding values (GEBVs) for selecting parental lines that maximize the genetic gain as well as methods for improving t...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10401442/ https://www.ncbi.nlm.nih.gov/pubmed/37546253 http://dx.doi.org/10.3389/fpls.2023.1218665 |
_version_ | 1785084664886591488 |
---|---|
author | Vanavermaete, David Maenhout, Steven Fostier, Jan De Baets, Bernard |
author_facet | Vanavermaete, David Maenhout, Steven Fostier, Jan De Baets, Bernard |
author_sort | Vanavermaete, David |
collection | PubMed |
description | Since the introduction of genomic selection in plant breeding, high genetic gains have been realized in different plant breeding programs. Various methods based on genomic estimated breeding values (GEBVs) for selecting parental lines that maximize the genetic gain as well as methods for improving the predictive performance of genomic selection have been proposed. Unfortunately, it remains difficult to measure to what extent these methods really maximize long-term genetic values. In this study, we propose oracle selection, a hypothetical frame of mind that uses the ground truth to optimally select parents or optimize the training population in order to maximize the genetic gain in each breeding cycle. Clearly, oracle selection cannot be applied in a true breeding program, but allows for the assessment of existing parental selection and training population update methods and the evaluation of how far these methods are from the optimal utopian solution. |
format | Online Article Text |
id | pubmed-10401442 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104014422023-08-05 Oracle selection provides insight into how far off practice is from Utopia in plant breeding Vanavermaete, David Maenhout, Steven Fostier, Jan De Baets, Bernard Front Plant Sci Plant Science Since the introduction of genomic selection in plant breeding, high genetic gains have been realized in different plant breeding programs. Various methods based on genomic estimated breeding values (GEBVs) for selecting parental lines that maximize the genetic gain as well as methods for improving the predictive performance of genomic selection have been proposed. Unfortunately, it remains difficult to measure to what extent these methods really maximize long-term genetic values. In this study, we propose oracle selection, a hypothetical frame of mind that uses the ground truth to optimally select parents or optimize the training population in order to maximize the genetic gain in each breeding cycle. Clearly, oracle selection cannot be applied in a true breeding program, but allows for the assessment of existing parental selection and training population update methods and the evaluation of how far these methods are from the optimal utopian solution. Frontiers Media S.A. 2023-07-21 /pmc/articles/PMC10401442/ /pubmed/37546253 http://dx.doi.org/10.3389/fpls.2023.1218665 Text en Copyright © 2023 Vanavermaete, Maenhout, Fostier and De Baets https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Vanavermaete, David Maenhout, Steven Fostier, Jan De Baets, Bernard Oracle selection provides insight into how far off practice is from Utopia in plant breeding |
title | Oracle selection provides insight into how far off practice is from Utopia in plant breeding |
title_full | Oracle selection provides insight into how far off practice is from Utopia in plant breeding |
title_fullStr | Oracle selection provides insight into how far off practice is from Utopia in plant breeding |
title_full_unstemmed | Oracle selection provides insight into how far off practice is from Utopia in plant breeding |
title_short | Oracle selection provides insight into how far off practice is from Utopia in plant breeding |
title_sort | oracle selection provides insight into how far off practice is from utopia in plant breeding |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10401442/ https://www.ncbi.nlm.nih.gov/pubmed/37546253 http://dx.doi.org/10.3389/fpls.2023.1218665 |
work_keys_str_mv | AT vanavermaetedavid oracleselectionprovidesinsightintohowfaroffpracticeisfromutopiainplantbreeding AT maenhoutsteven oracleselectionprovidesinsightintohowfaroffpracticeisfromutopiainplantbreeding AT fostierjan oracleselectionprovidesinsightintohowfaroffpracticeisfromutopiainplantbreeding AT debaetsbernard oracleselectionprovidesinsightintohowfaroffpracticeisfromutopiainplantbreeding |