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Oracle selection provides insight into how far off practice is from Utopia in plant breeding

Since the introduction of genomic selection in plant breeding, high genetic gains have been realized in different plant breeding programs. Various methods based on genomic estimated breeding values (GEBVs) for selecting parental lines that maximize the genetic gain as well as methods for improving t...

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Autores principales: Vanavermaete, David, Maenhout, Steven, Fostier, Jan, De Baets, Bernard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10401442/
https://www.ncbi.nlm.nih.gov/pubmed/37546253
http://dx.doi.org/10.3389/fpls.2023.1218665
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author Vanavermaete, David
Maenhout, Steven
Fostier, Jan
De Baets, Bernard
author_facet Vanavermaete, David
Maenhout, Steven
Fostier, Jan
De Baets, Bernard
author_sort Vanavermaete, David
collection PubMed
description Since the introduction of genomic selection in plant breeding, high genetic gains have been realized in different plant breeding programs. Various methods based on genomic estimated breeding values (GEBVs) for selecting parental lines that maximize the genetic gain as well as methods for improving the predictive performance of genomic selection have been proposed. Unfortunately, it remains difficult to measure to what extent these methods really maximize long-term genetic values. In this study, we propose oracle selection, a hypothetical frame of mind that uses the ground truth to optimally select parents or optimize the training population in order to maximize the genetic gain in each breeding cycle. Clearly, oracle selection cannot be applied in a true breeding program, but allows for the assessment of existing parental selection and training population update methods and the evaluation of how far these methods are from the optimal utopian solution.
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spelling pubmed-104014422023-08-05 Oracle selection provides insight into how far off practice is from Utopia in plant breeding Vanavermaete, David Maenhout, Steven Fostier, Jan De Baets, Bernard Front Plant Sci Plant Science Since the introduction of genomic selection in plant breeding, high genetic gains have been realized in different plant breeding programs. Various methods based on genomic estimated breeding values (GEBVs) for selecting parental lines that maximize the genetic gain as well as methods for improving the predictive performance of genomic selection have been proposed. Unfortunately, it remains difficult to measure to what extent these methods really maximize long-term genetic values. In this study, we propose oracle selection, a hypothetical frame of mind that uses the ground truth to optimally select parents or optimize the training population in order to maximize the genetic gain in each breeding cycle. Clearly, oracle selection cannot be applied in a true breeding program, but allows for the assessment of existing parental selection and training population update methods and the evaluation of how far these methods are from the optimal utopian solution. Frontiers Media S.A. 2023-07-21 /pmc/articles/PMC10401442/ /pubmed/37546253 http://dx.doi.org/10.3389/fpls.2023.1218665 Text en Copyright © 2023 Vanavermaete, Maenhout, Fostier and De Baets https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Vanavermaete, David
Maenhout, Steven
Fostier, Jan
De Baets, Bernard
Oracle selection provides insight into how far off practice is from Utopia in plant breeding
title Oracle selection provides insight into how far off practice is from Utopia in plant breeding
title_full Oracle selection provides insight into how far off practice is from Utopia in plant breeding
title_fullStr Oracle selection provides insight into how far off practice is from Utopia in plant breeding
title_full_unstemmed Oracle selection provides insight into how far off practice is from Utopia in plant breeding
title_short Oracle selection provides insight into how far off practice is from Utopia in plant breeding
title_sort oracle selection provides insight into how far off practice is from utopia in plant breeding
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10401442/
https://www.ncbi.nlm.nih.gov/pubmed/37546253
http://dx.doi.org/10.3389/fpls.2023.1218665
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