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Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods

The diversity of venomous organisms and the toxins they produce have been increasingly investigated, but taxonomic bias remains important. Neogastropods, a group of marine predators representing almost 22% of the known gastropod diversity, evolved a wide range of feeding strategies, including the pr...

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Autores principales: Farhat, Sarah, Modica, Maria Vittoria, Puillandre, Nicolas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10401626/
https://www.ncbi.nlm.nih.gov/pubmed/37494290
http://dx.doi.org/10.1093/molbev/msad171
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author Farhat, Sarah
Modica, Maria Vittoria
Puillandre, Nicolas
author_facet Farhat, Sarah
Modica, Maria Vittoria
Puillandre, Nicolas
author_sort Farhat, Sarah
collection PubMed
description The diversity of venomous organisms and the toxins they produce have been increasingly investigated, but taxonomic bias remains important. Neogastropods, a group of marine predators representing almost 22% of the known gastropod diversity, evolved a wide range of feeding strategies, including the production of toxins to subdue their preys. However, whether the diversity of these compounds is at the origin of the hyperdiversification of the group and how genome evolution may correlate with both the compounds and species diversities remain understudied. Among the available gastropods genomes, only eight, with uneven quality assemblies, belong to neogastropods. Here, we generated chromosome-level assemblies of two species belonging to the Tonnoidea and Muricoidea superfamilies (Monoplex corrugatus and Stramonita haemastoma). The two obtained high-quality genomes had 3 and 2.2 Gb, respectively, and 92–89% of the total assembly conformed 35 pseudochromosomes in each species. Through the analysis of syntenic blocks, Hox gene cluster duplication, and synonymous substitutions distribution pattern, we inferred the occurrence of a whole genome duplication event in both genomes. As these species are known to release venom, toxins were annotated in both genomes, but few of them were found in homologous chromosomes. A comparison of the expression of ohnolog genes (using transcriptomes from osphradium and salivary glands in S. haemastoma), where both copies were differentially expressed, showed that most of them had similar expression profiles. The high quality of these genomes makes them valuable reference in their respective taxa, facilitating the identification of genome-level processes at the origin of their evolutionary success.
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spelling pubmed-104016262023-08-05 Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods Farhat, Sarah Modica, Maria Vittoria Puillandre, Nicolas Mol Biol Evol Discoveries The diversity of venomous organisms and the toxins they produce have been increasingly investigated, but taxonomic bias remains important. Neogastropods, a group of marine predators representing almost 22% of the known gastropod diversity, evolved a wide range of feeding strategies, including the production of toxins to subdue their preys. However, whether the diversity of these compounds is at the origin of the hyperdiversification of the group and how genome evolution may correlate with both the compounds and species diversities remain understudied. Among the available gastropods genomes, only eight, with uneven quality assemblies, belong to neogastropods. Here, we generated chromosome-level assemblies of two species belonging to the Tonnoidea and Muricoidea superfamilies (Monoplex corrugatus and Stramonita haemastoma). The two obtained high-quality genomes had 3 and 2.2 Gb, respectively, and 92–89% of the total assembly conformed 35 pseudochromosomes in each species. Through the analysis of syntenic blocks, Hox gene cluster duplication, and synonymous substitutions distribution pattern, we inferred the occurrence of a whole genome duplication event in both genomes. As these species are known to release venom, toxins were annotated in both genomes, but few of them were found in homologous chromosomes. A comparison of the expression of ohnolog genes (using transcriptomes from osphradium and salivary glands in S. haemastoma), where both copies were differentially expressed, showed that most of them had similar expression profiles. The high quality of these genomes makes them valuable reference in their respective taxa, facilitating the identification of genome-level processes at the origin of their evolutionary success. Oxford University Press 2023-07-26 /pmc/articles/PMC10401626/ /pubmed/37494290 http://dx.doi.org/10.1093/molbev/msad171 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Discoveries
Farhat, Sarah
Modica, Maria Vittoria
Puillandre, Nicolas
Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods
title Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods
title_full Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods
title_fullStr Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods
title_full_unstemmed Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods
title_short Whole Genome Duplication and Gene Evolution in the Hyperdiverse Venomous Gastropods
title_sort whole genome duplication and gene evolution in the hyperdiverse venomous gastropods
topic Discoveries
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10401626/
https://www.ncbi.nlm.nih.gov/pubmed/37494290
http://dx.doi.org/10.1093/molbev/msad171
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