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Exploring NCATS In-House Biomedical Data for Evidence-based Drug Repurposing

Drug repurposing is a strategy for identifying new uses of approved or investigational drugs that are outside the scope of the original medical indication. Even though many repurposed drugs have been found serendipitously in the past, the increasing availability of large volumes of biomedical data h...

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Detalles Bibliográficos
Autores principales: Liu, Fang, Patt, Andrew, Chen, Chloe, Huang, Ruili, Xu, Yanji, Mathé, Ewy A., Zhu, Qian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10401966/
https://www.ncbi.nlm.nih.gov/pubmed/37546930
http://dx.doi.org/10.1101/2023.07.21.550045
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author Liu, Fang
Patt, Andrew
Chen, Chloe
Huang, Ruili
Xu, Yanji
Mathé, Ewy A.
Zhu, Qian
author_facet Liu, Fang
Patt, Andrew
Chen, Chloe
Huang, Ruili
Xu, Yanji
Mathé, Ewy A.
Zhu, Qian
author_sort Liu, Fang
collection PubMed
description Drug repurposing is a strategy for identifying new uses of approved or investigational drugs that are outside the scope of the original medical indication. Even though many repurposed drugs have been found serendipitously in the past, the increasing availability of large volumes of biomedical data has enabled more systemic, data-driven approaches for drug candidate identification. At National Center of Advancing Translational Sciences (NCATS), we invent new methods to generate new data and information publicly available to spur innovation and scientific discovery. In this study, we aimed to explore and demonstrate biomedical data generated and collected via two NCATS research programs, the Toxicology in the 21st Century program (Tox21) and the Biomedical Data Translator (Translator) for the application of drug repurposing. These two programs provide complementary types of biomedical data from uncovering underlying biological mechanisms with bioassay screening data from Tox21 for chemical clustering, to enrich clustered chemicals with scientific evidence mined from the Translator towards drug repurposing. 129 chemical clusters have been generated and three of them have been further investigated for drug repurposing candidate identification, which is detailed as case studies.
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spelling pubmed-104019662023-08-05 Exploring NCATS In-House Biomedical Data for Evidence-based Drug Repurposing Liu, Fang Patt, Andrew Chen, Chloe Huang, Ruili Xu, Yanji Mathé, Ewy A. Zhu, Qian bioRxiv Article Drug repurposing is a strategy for identifying new uses of approved or investigational drugs that are outside the scope of the original medical indication. Even though many repurposed drugs have been found serendipitously in the past, the increasing availability of large volumes of biomedical data has enabled more systemic, data-driven approaches for drug candidate identification. At National Center of Advancing Translational Sciences (NCATS), we invent new methods to generate new data and information publicly available to spur innovation and scientific discovery. In this study, we aimed to explore and demonstrate biomedical data generated and collected via two NCATS research programs, the Toxicology in the 21st Century program (Tox21) and the Biomedical Data Translator (Translator) for the application of drug repurposing. These two programs provide complementary types of biomedical data from uncovering underlying biological mechanisms with bioassay screening data from Tox21 for chemical clustering, to enrich clustered chemicals with scientific evidence mined from the Translator towards drug repurposing. 129 chemical clusters have been generated and three of them have been further investigated for drug repurposing candidate identification, which is detailed as case studies. Cold Spring Harbor Laboratory 2023-07-25 /pmc/articles/PMC10401966/ /pubmed/37546930 http://dx.doi.org/10.1101/2023.07.21.550045 Text en https://creativecommons.org/publicdomain/zero/1.0/This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license (https://creativecommons.org/publicdomain/zero/1.0/) .
spellingShingle Article
Liu, Fang
Patt, Andrew
Chen, Chloe
Huang, Ruili
Xu, Yanji
Mathé, Ewy A.
Zhu, Qian
Exploring NCATS In-House Biomedical Data for Evidence-based Drug Repurposing
title Exploring NCATS In-House Biomedical Data for Evidence-based Drug Repurposing
title_full Exploring NCATS In-House Biomedical Data for Evidence-based Drug Repurposing
title_fullStr Exploring NCATS In-House Biomedical Data for Evidence-based Drug Repurposing
title_full_unstemmed Exploring NCATS In-House Biomedical Data for Evidence-based Drug Repurposing
title_short Exploring NCATS In-House Biomedical Data for Evidence-based Drug Repurposing
title_sort exploring ncats in-house biomedical data for evidence-based drug repurposing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10401966/
https://www.ncbi.nlm.nih.gov/pubmed/37546930
http://dx.doi.org/10.1101/2023.07.21.550045
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