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SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA
PURPOSE: Medulloblastoma survival and treatment response has shown wide variability based on molecular and genomic subtyping. Early prediction of overall survival (OS) may afford clinicians an opportunity to develop individualized treatment paradigms for patients. Computational pathology (“pathomics...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10402417/ http://dx.doi.org/10.1093/noajnl/vdad070.095 |
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author | Mahtabfar, Aria Familiar, Ariana Kazerooni, Anahita Fathi Kiani, Mahsa Haldar, Debanjan Viswanathan, Karthik Resnick, Adam Storm, Phillip Viaene, Angela Nabavizadeh, Ali |
author_facet | Mahtabfar, Aria Familiar, Ariana Kazerooni, Anahita Fathi Kiani, Mahsa Haldar, Debanjan Viswanathan, Karthik Resnick, Adam Storm, Phillip Viaene, Angela Nabavizadeh, Ali |
author_sort | Mahtabfar, Aria |
collection | PubMed |
description | PURPOSE: Medulloblastoma survival and treatment response has shown wide variability based on molecular and genomic subtyping. Early prediction of overall survival (OS) may afford clinicians an opportunity to develop individualized treatment paradigms for patients. Computational pathology (“pathomics”) confers the ability to extract sub-visual histopathologic features using high-throughput analysis to better characterize tumor biology or behavior. METHODS: Using the Children’s Brain Tumor Network database, pediatric patients with available clinical data and whole-slide images (WSI) were evaluated for inclusion in the study. 1mm x 1mm regions-of-interest (ROI) on each H&E-stained WSI were selected to identify tumor-rich areas for subsequent pathomic analysis, and 49 quantitative pathomics features were extracted using a digital pathology software package (Qupath). LASSO cox proportional hazard model with stratified 5-fold cross-validation was used to identify high-performing features and generate risk scores. Estimated risk scores were subsequently used to stratify patients into low-, medium- and high-risk OS cohorts. Two separate models were trained including either: 1) clinical variables only; or 2) combined clinical and pathomic features. RESULTS: A total of 84 patients with median age at diagnosis of 8.61 years (range 0.31-21.72), and median OS of 45.6 months (range 0.76-195.87)) were included in the study. A survival model built using only clinical features yielded a concordance index (c-index) of 0.76 compared to actual outcomes (stratification: p<0.001). Combining clinical and high-performing pathomic features, however, yielded the best performance of the model, showing disparate outcomes between low-, medium- and high-risk groups (p<0.001) with resultant c-index of 0.85. CONCLUSION: Our results highlight the utility of pathomics analysis in predicting survival in patients with pediatric medulloblastoma, which can be used to guide treatment strategy. Further work will aim to perform our analysis on an unseen validation set to improve its performance and applicability in the clinical realm. |
format | Online Article Text |
id | pubmed-10402417 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-104024172023-08-05 SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA Mahtabfar, Aria Familiar, Ariana Kazerooni, Anahita Fathi Kiani, Mahsa Haldar, Debanjan Viswanathan, Karthik Resnick, Adam Storm, Phillip Viaene, Angela Nabavizadeh, Ali Neurooncol Adv Final Category: Screening/Diagnostics/Prognostics PURPOSE: Medulloblastoma survival and treatment response has shown wide variability based on molecular and genomic subtyping. Early prediction of overall survival (OS) may afford clinicians an opportunity to develop individualized treatment paradigms for patients. Computational pathology (“pathomics”) confers the ability to extract sub-visual histopathologic features using high-throughput analysis to better characterize tumor biology or behavior. METHODS: Using the Children’s Brain Tumor Network database, pediatric patients with available clinical data and whole-slide images (WSI) were evaluated for inclusion in the study. 1mm x 1mm regions-of-interest (ROI) on each H&E-stained WSI were selected to identify tumor-rich areas for subsequent pathomic analysis, and 49 quantitative pathomics features were extracted using a digital pathology software package (Qupath). LASSO cox proportional hazard model with stratified 5-fold cross-validation was used to identify high-performing features and generate risk scores. Estimated risk scores were subsequently used to stratify patients into low-, medium- and high-risk OS cohorts. Two separate models were trained including either: 1) clinical variables only; or 2) combined clinical and pathomic features. RESULTS: A total of 84 patients with median age at diagnosis of 8.61 years (range 0.31-21.72), and median OS of 45.6 months (range 0.76-195.87)) were included in the study. A survival model built using only clinical features yielded a concordance index (c-index) of 0.76 compared to actual outcomes (stratification: p<0.001). Combining clinical and high-performing pathomic features, however, yielded the best performance of the model, showing disparate outcomes between low-, medium- and high-risk groups (p<0.001) with resultant c-index of 0.85. CONCLUSION: Our results highlight the utility of pathomics analysis in predicting survival in patients with pediatric medulloblastoma, which can be used to guide treatment strategy. Further work will aim to perform our analysis on an unseen validation set to improve its performance and applicability in the clinical realm. Oxford University Press 2023-08-04 /pmc/articles/PMC10402417/ http://dx.doi.org/10.1093/noajnl/vdad070.095 Text en © The Author(s) 2023. Published by Oxford University Press, the Society for Neuro-Oncology and the European Association of Neuro-Oncology. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Final Category: Screening/Diagnostics/Prognostics Mahtabfar, Aria Familiar, Ariana Kazerooni, Anahita Fathi Kiani, Mahsa Haldar, Debanjan Viswanathan, Karthik Resnick, Adam Storm, Phillip Viaene, Angela Nabavizadeh, Ali SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA |
title | SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA |
title_full | SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA |
title_fullStr | SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA |
title_full_unstemmed | SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA |
title_short | SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA |
title_sort | sdps-41 pathomics augments predictive survival modellingin medulloblastoma |
topic | Final Category: Screening/Diagnostics/Prognostics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10402417/ http://dx.doi.org/10.1093/noajnl/vdad070.095 |
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