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SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA

PURPOSE: Medulloblastoma survival and treatment response has shown wide variability based on molecular and genomic subtyping. Early prediction of overall survival (OS) may afford clinicians an opportunity to develop individualized treatment paradigms for patients. Computational pathology (“pathomics...

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Autores principales: Mahtabfar, Aria, Familiar, Ariana, Kazerooni, Anahita Fathi, Kiani, Mahsa, Haldar, Debanjan, Viswanathan, Karthik, Resnick, Adam, Storm, Phillip, Viaene, Angela, Nabavizadeh, Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10402417/
http://dx.doi.org/10.1093/noajnl/vdad070.095
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author Mahtabfar, Aria
Familiar, Ariana
Kazerooni, Anahita Fathi
Kiani, Mahsa
Haldar, Debanjan
Viswanathan, Karthik
Resnick, Adam
Storm, Phillip
Viaene, Angela
Nabavizadeh, Ali
author_facet Mahtabfar, Aria
Familiar, Ariana
Kazerooni, Anahita Fathi
Kiani, Mahsa
Haldar, Debanjan
Viswanathan, Karthik
Resnick, Adam
Storm, Phillip
Viaene, Angela
Nabavizadeh, Ali
author_sort Mahtabfar, Aria
collection PubMed
description PURPOSE: Medulloblastoma survival and treatment response has shown wide variability based on molecular and genomic subtyping. Early prediction of overall survival (OS) may afford clinicians an opportunity to develop individualized treatment paradigms for patients. Computational pathology (“pathomics”) confers the ability to extract sub-visual histopathologic features using high-throughput analysis to better characterize tumor biology or behavior. METHODS: Using the Children’s Brain Tumor Network database, pediatric patients with available clinical data and whole-slide images (WSI) were evaluated for inclusion in the study. 1mm x 1mm regions-of-interest (ROI) on each H&E-stained WSI were selected to identify tumor-rich areas for subsequent pathomic analysis, and 49 quantitative pathomics features were extracted using a digital pathology software package (Qupath). LASSO cox proportional hazard model with stratified 5-fold cross-validation was used to identify high-performing features and generate risk scores. Estimated risk scores were subsequently used to stratify patients into low-, medium- and high-risk OS cohorts. Two separate models were trained including either: 1) clinical variables only; or 2) combined clinical and pathomic features. RESULTS: A total of 84 patients with median age at diagnosis of 8.61 years (range 0.31-21.72), and median OS of 45.6 months (range 0.76-195.87)) were included in the study. A survival model built using only clinical features yielded a concordance index (c-index) of 0.76 compared to actual outcomes (stratification: p<0.001). Combining clinical and high-performing pathomic features, however, yielded the best performance of the model, showing disparate outcomes between low-, medium- and high-risk groups (p<0.001) with resultant c-index of 0.85. CONCLUSION: Our results highlight the utility of pathomics analysis in predicting survival in patients with pediatric medulloblastoma, which can be used to guide treatment strategy. Further work will aim to perform our analysis on an unseen validation set to improve its performance and applicability in the clinical realm.
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spelling pubmed-104024172023-08-05 SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA Mahtabfar, Aria Familiar, Ariana Kazerooni, Anahita Fathi Kiani, Mahsa Haldar, Debanjan Viswanathan, Karthik Resnick, Adam Storm, Phillip Viaene, Angela Nabavizadeh, Ali Neurooncol Adv Final Category: Screening/Diagnostics/Prognostics PURPOSE: Medulloblastoma survival and treatment response has shown wide variability based on molecular and genomic subtyping. Early prediction of overall survival (OS) may afford clinicians an opportunity to develop individualized treatment paradigms for patients. Computational pathology (“pathomics”) confers the ability to extract sub-visual histopathologic features using high-throughput analysis to better characterize tumor biology or behavior. METHODS: Using the Children’s Brain Tumor Network database, pediatric patients with available clinical data and whole-slide images (WSI) were evaluated for inclusion in the study. 1mm x 1mm regions-of-interest (ROI) on each H&E-stained WSI were selected to identify tumor-rich areas for subsequent pathomic analysis, and 49 quantitative pathomics features were extracted using a digital pathology software package (Qupath). LASSO cox proportional hazard model with stratified 5-fold cross-validation was used to identify high-performing features and generate risk scores. Estimated risk scores were subsequently used to stratify patients into low-, medium- and high-risk OS cohorts. Two separate models were trained including either: 1) clinical variables only; or 2) combined clinical and pathomic features. RESULTS: A total of 84 patients with median age at diagnosis of 8.61 years (range 0.31-21.72), and median OS of 45.6 months (range 0.76-195.87)) were included in the study. A survival model built using only clinical features yielded a concordance index (c-index) of 0.76 compared to actual outcomes (stratification: p<0.001). Combining clinical and high-performing pathomic features, however, yielded the best performance of the model, showing disparate outcomes between low-, medium- and high-risk groups (p<0.001) with resultant c-index of 0.85. CONCLUSION: Our results highlight the utility of pathomics analysis in predicting survival in patients with pediatric medulloblastoma, which can be used to guide treatment strategy. Further work will aim to perform our analysis on an unseen validation set to improve its performance and applicability in the clinical realm. Oxford University Press 2023-08-04 /pmc/articles/PMC10402417/ http://dx.doi.org/10.1093/noajnl/vdad070.095 Text en © The Author(s) 2023. Published by Oxford University Press, the Society for Neuro-Oncology and the European Association of Neuro-Oncology. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Final Category: Screening/Diagnostics/Prognostics
Mahtabfar, Aria
Familiar, Ariana
Kazerooni, Anahita Fathi
Kiani, Mahsa
Haldar, Debanjan
Viswanathan, Karthik
Resnick, Adam
Storm, Phillip
Viaene, Angela
Nabavizadeh, Ali
SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA
title SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA
title_full SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA
title_fullStr SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA
title_full_unstemmed SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA
title_short SDPS-41 PATHOMICS AUGMENTS PREDICTIVE SURVIVAL MODELLINGIN MEDULLOBLASTOMA
title_sort sdps-41 pathomics augments predictive survival modellingin medulloblastoma
topic Final Category: Screening/Diagnostics/Prognostics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10402417/
http://dx.doi.org/10.1093/noajnl/vdad070.095
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