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Identification and validation of a genetic risk signature associated with prognosis in clear-cell renal cell carcinoma patients

Clear-cell renal cell carcinoma (ccRCC) is the most common subtype of renal cell carcinoma (RCC), which exhibits great variability in the prognosis of patients. Endoplasmic reticulum stress (ERS) is a persistent state triggered by disruption of endoplasmic reticulum (ER) homeostasis, which has been...

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Autores principales: Lian, Meiqin, Feng, Yueyuan, Wu, Zhenyu, Zheng, Zhonghong, Liu, Huanhuan, Li, Jian, Yu, Huixia, Lian, Changlin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10402947/
https://www.ncbi.nlm.nih.gov/pubmed/37543772
http://dx.doi.org/10.1097/MD.0000000000034582
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author Lian, Meiqin
Feng, Yueyuan
Wu, Zhenyu
Zheng, Zhonghong
Liu, Huanhuan
Li, Jian
Yu, Huixia
Lian, Changlin
author_facet Lian, Meiqin
Feng, Yueyuan
Wu, Zhenyu
Zheng, Zhonghong
Liu, Huanhuan
Li, Jian
Yu, Huixia
Lian, Changlin
author_sort Lian, Meiqin
collection PubMed
description Clear-cell renal cell carcinoma (ccRCC) is the most common subtype of renal cell carcinoma (RCC), which exhibits great variability in the prognosis of patients. Endoplasmic reticulum stress (ERS) is a persistent state triggered by disruption of endoplasmic reticulum (ER) homeostasis, which has been shown to control multiple pro-tumor-associated pathways in malignant cells while dynamically reprogramming immune cell function. This study aimed to identify ERS-related genetic risk signatures (ERSGRS) to ameliorate survival prediction in ccRCC patients. In this study, we adopted differentially expressed genes (DEGs) from the Cancer Genome Atlas (TCGA) and constructed ERSGRS with independent prognostic significance by least absolute shrinkage and selection operator (LASSO) regression. After separation of patients based on risk score, survival analysis showed that low-risk patients had longer overall survival (OS) than high-risk patients, and receiver operating characteristic (ROC) curve analysis confirmed the strong predictive ability of ERSGRS. Meanwhile, the tumor microenvironment (TME) of the high-risk group demonstrated an immunosuppressive phenotype, with more infiltration of regulatory T cells (Tregs) and macrophages. The TME in the low-risk group had a stronger potential for anti-tumor immunity. Overall, the ERSGRS could be a valuable predictive tool for ccRCC prognosis.
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spelling pubmed-104029472023-08-05 Identification and validation of a genetic risk signature associated with prognosis in clear-cell renal cell carcinoma patients Lian, Meiqin Feng, Yueyuan Wu, Zhenyu Zheng, Zhonghong Liu, Huanhuan Li, Jian Yu, Huixia Lian, Changlin Medicine (Baltimore) Research Article: Observational Study Clear-cell renal cell carcinoma (ccRCC) is the most common subtype of renal cell carcinoma (RCC), which exhibits great variability in the prognosis of patients. Endoplasmic reticulum stress (ERS) is a persistent state triggered by disruption of endoplasmic reticulum (ER) homeostasis, which has been shown to control multiple pro-tumor-associated pathways in malignant cells while dynamically reprogramming immune cell function. This study aimed to identify ERS-related genetic risk signatures (ERSGRS) to ameliorate survival prediction in ccRCC patients. In this study, we adopted differentially expressed genes (DEGs) from the Cancer Genome Atlas (TCGA) and constructed ERSGRS with independent prognostic significance by least absolute shrinkage and selection operator (LASSO) regression. After separation of patients based on risk score, survival analysis showed that low-risk patients had longer overall survival (OS) than high-risk patients, and receiver operating characteristic (ROC) curve analysis confirmed the strong predictive ability of ERSGRS. Meanwhile, the tumor microenvironment (TME) of the high-risk group demonstrated an immunosuppressive phenotype, with more infiltration of regulatory T cells (Tregs) and macrophages. The TME in the low-risk group had a stronger potential for anti-tumor immunity. Overall, the ERSGRS could be a valuable predictive tool for ccRCC prognosis. Lippincott Williams & Wilkins 2023-08-04 /pmc/articles/PMC10402947/ /pubmed/37543772 http://dx.doi.org/10.1097/MD.0000000000034582 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License 4.0 (CCBY) (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. This article is made available via the PMC Open Access Subset for unrestricted re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the COVID-19 pandemic or until permissions are revoked in writing. Upon expiration of these permissions, PMC is granted a perpetual license to make this article available via PMC and Europe PMC, consistent with existing copyright protections.
spellingShingle Research Article: Observational Study
Lian, Meiqin
Feng, Yueyuan
Wu, Zhenyu
Zheng, Zhonghong
Liu, Huanhuan
Li, Jian
Yu, Huixia
Lian, Changlin
Identification and validation of a genetic risk signature associated with prognosis in clear-cell renal cell carcinoma patients
title Identification and validation of a genetic risk signature associated with prognosis in clear-cell renal cell carcinoma patients
title_full Identification and validation of a genetic risk signature associated with prognosis in clear-cell renal cell carcinoma patients
title_fullStr Identification and validation of a genetic risk signature associated with prognosis in clear-cell renal cell carcinoma patients
title_full_unstemmed Identification and validation of a genetic risk signature associated with prognosis in clear-cell renal cell carcinoma patients
title_short Identification and validation of a genetic risk signature associated with prognosis in clear-cell renal cell carcinoma patients
title_sort identification and validation of a genetic risk signature associated with prognosis in clear-cell renal cell carcinoma patients
topic Research Article: Observational Study
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10402947/
https://www.ncbi.nlm.nih.gov/pubmed/37543772
http://dx.doi.org/10.1097/MD.0000000000034582
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