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Coupling Plant Growth Models and Pest and Disease Models: An Interaction Structure Proposal, MIMIC
Coupling plant growth model with pests and diseases (P&D) models, with consideration for the long-term feedback that occurs after the interaction, is still a challenging task nowadays. While a number of studies have examined various methodologies, none of them provides a generic frame able to ho...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AAAS
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10403158/ https://www.ncbi.nlm.nih.gov/pubmed/37545839 http://dx.doi.org/10.34133/plantphenomics.0077 |
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author | Triki, Houssem E. M. Ribeyre, Fabienne Pinard, Fabrice Jaeger, Marc |
author_facet | Triki, Houssem E. M. Ribeyre, Fabienne Pinard, Fabrice Jaeger, Marc |
author_sort | Triki, Houssem E. M. |
collection | PubMed |
description | Coupling plant growth model with pests and diseases (P&D) models, with consideration for the long-term feedback that occurs after the interaction, is still a challenging task nowadays. While a number of studies have examined various methodologies, none of them provides a generic frame able to host existing models and their codes without updating deeply their architecture. We developed MIMIC (Mediation Interface for Model Inner Coupling), an open-access framework/tool for this objective. MIMIC allows to couple plant growth and P&D models in a variety of ways. Users can experiment with various interaction configurations, ranging from a weak coupling that is mediated by the direct exchange of inputs and outputs between models to an advanced coupling that utilizes a third-party tool if the models’ data or operating cycles do not align. The users decide how the interactions operate, and the platform offers powerful tools to design key features of the interactions, mobilizing metaprogramming techniques. The proposed framework is demonstrated, implementing coffee berry borers’ attacks on Coffea arabica fruits. Observations conducted in a field in Sumatra (Indonesia) assess the coupled interaction model. Finally, we highlight the user-centric implementation characteristics of MIMIC, as a practical and convenient tool that requires minimal coding knowledge to use. |
format | Online Article Text |
id | pubmed-10403158 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | AAAS |
record_format | MEDLINE/PubMed |
spelling | pubmed-104031582023-08-05 Coupling Plant Growth Models and Pest and Disease Models: An Interaction Structure Proposal, MIMIC Triki, Houssem E. M. Ribeyre, Fabienne Pinard, Fabrice Jaeger, Marc Plant Phenomics Database/Software Article Coupling plant growth model with pests and diseases (P&D) models, with consideration for the long-term feedback that occurs after the interaction, is still a challenging task nowadays. While a number of studies have examined various methodologies, none of them provides a generic frame able to host existing models and their codes without updating deeply their architecture. We developed MIMIC (Mediation Interface for Model Inner Coupling), an open-access framework/tool for this objective. MIMIC allows to couple plant growth and P&D models in a variety of ways. Users can experiment with various interaction configurations, ranging from a weak coupling that is mediated by the direct exchange of inputs and outputs between models to an advanced coupling that utilizes a third-party tool if the models’ data or operating cycles do not align. The users decide how the interactions operate, and the platform offers powerful tools to design key features of the interactions, mobilizing metaprogramming techniques. The proposed framework is demonstrated, implementing coffee berry borers’ attacks on Coffea arabica fruits. Observations conducted in a field in Sumatra (Indonesia) assess the coupled interaction model. Finally, we highlight the user-centric implementation characteristics of MIMIC, as a practical and convenient tool that requires minimal coding knowledge to use. AAAS 2023-08-04 /pmc/articles/PMC10403158/ /pubmed/37545839 http://dx.doi.org/10.34133/plantphenomics.0077 Text en Copyright © 2023 Houssem E. M. Triki et al. https://creativecommons.org/licenses/by/4.0/Exclusive licensee Nanjing Agricultural University. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY 4.0) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Database/Software Article Triki, Houssem E. M. Ribeyre, Fabienne Pinard, Fabrice Jaeger, Marc Coupling Plant Growth Models and Pest and Disease Models: An Interaction Structure Proposal, MIMIC |
title | Coupling Plant Growth Models and Pest and Disease Models: An Interaction Structure Proposal, MIMIC |
title_full | Coupling Plant Growth Models and Pest and Disease Models: An Interaction Structure Proposal, MIMIC |
title_fullStr | Coupling Plant Growth Models and Pest and Disease Models: An Interaction Structure Proposal, MIMIC |
title_full_unstemmed | Coupling Plant Growth Models and Pest and Disease Models: An Interaction Structure Proposal, MIMIC |
title_short | Coupling Plant Growth Models and Pest and Disease Models: An Interaction Structure Proposal, MIMIC |
title_sort | coupling plant growth models and pest and disease models: an interaction structure proposal, mimic |
topic | Database/Software Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10403158/ https://www.ncbi.nlm.nih.gov/pubmed/37545839 http://dx.doi.org/10.34133/plantphenomics.0077 |
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