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Protocol for Biospecimen Collection and Analysis Within the BACPAC Research Program

The Biospecimen Collection and Processing Working Group of the National Institutes of Health (NIH) HEAL Initiative BACPAC Research Program was charged with identifying molecular biomarkers of interest to chronic low back pain (cLBP). Having identified biomarkers of interest, the Working Group worked...

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Autores principales: Fields, Aaron J, Dudli, Stefan, Schrepf, Andrew, Kim, Angie, Pham, Bernice, Gallego, Estefania, Mendoza, Sandra, Meropol, Sharon B, Darwin, Jessa, Sowa, Gwendolyn, Vo, Nam V
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10403310/
https://www.ncbi.nlm.nih.gov/pubmed/36525387
http://dx.doi.org/10.1093/pm/pnac197
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author Fields, Aaron J
Dudli, Stefan
Schrepf, Andrew
Kim, Angie
Pham, Bernice
Gallego, Estefania
Mendoza, Sandra
Meropol, Sharon B
Darwin, Jessa
Sowa, Gwendolyn
Vo, Nam V
author_facet Fields, Aaron J
Dudli, Stefan
Schrepf, Andrew
Kim, Angie
Pham, Bernice
Gallego, Estefania
Mendoza, Sandra
Meropol, Sharon B
Darwin, Jessa
Sowa, Gwendolyn
Vo, Nam V
author_sort Fields, Aaron J
collection PubMed
description The Biospecimen Collection and Processing Working Group of the National Institutes of Health (NIH) HEAL Initiative BACPAC Research Program was charged with identifying molecular biomarkers of interest to chronic low back pain (cLBP). Having identified biomarkers of interest, the Working Group worked with the New York University Grossman School of Medicine, Center for Biospecimen Research and Development—funded by the Early Phase Pain Investigation Clinical Network Data Coordinating Center—to harmonize consortium-wide and site-specific efforts for biospecimen collection and analysis. Biospecimen collected are saliva, blood (whole, plasma, serum), urine, stool, and spine tissue (paraspinal muscle, ligamentum flavum, vertebral bone, facet cartilage, disc endplate, annulus fibrosus, or nucleus pulposus). The omics data acquisition and analyses derived from the biospecimen include genomics and epigenetics from DNA, proteomics from protein, transcriptomics from RNA, and microbiomics from 16S rRNA. These analyses contribute to the overarching goal of BACPAC to phenotype cLBP and will guide future efforts for precision medicine treatment.
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spelling pubmed-104033102023-08-05 Protocol for Biospecimen Collection and Analysis Within the BACPAC Research Program Fields, Aaron J Dudli, Stefan Schrepf, Andrew Kim, Angie Pham, Bernice Gallego, Estefania Mendoza, Sandra Meropol, Sharon B Darwin, Jessa Sowa, Gwendolyn Vo, Nam V Pain Med Original Research Article The Biospecimen Collection and Processing Working Group of the National Institutes of Health (NIH) HEAL Initiative BACPAC Research Program was charged with identifying molecular biomarkers of interest to chronic low back pain (cLBP). Having identified biomarkers of interest, the Working Group worked with the New York University Grossman School of Medicine, Center for Biospecimen Research and Development—funded by the Early Phase Pain Investigation Clinical Network Data Coordinating Center—to harmonize consortium-wide and site-specific efforts for biospecimen collection and analysis. Biospecimen collected are saliva, blood (whole, plasma, serum), urine, stool, and spine tissue (paraspinal muscle, ligamentum flavum, vertebral bone, facet cartilage, disc endplate, annulus fibrosus, or nucleus pulposus). The omics data acquisition and analyses derived from the biospecimen include genomics and epigenetics from DNA, proteomics from protein, transcriptomics from RNA, and microbiomics from 16S rRNA. These analyses contribute to the overarching goal of BACPAC to phenotype cLBP and will guide future efforts for precision medicine treatment. Oxford University Press 2022-12-16 /pmc/articles/PMC10403310/ /pubmed/36525387 http://dx.doi.org/10.1093/pm/pnac197 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the American Academy of Pain Medicine. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research Article
Fields, Aaron J
Dudli, Stefan
Schrepf, Andrew
Kim, Angie
Pham, Bernice
Gallego, Estefania
Mendoza, Sandra
Meropol, Sharon B
Darwin, Jessa
Sowa, Gwendolyn
Vo, Nam V
Protocol for Biospecimen Collection and Analysis Within the BACPAC Research Program
title Protocol for Biospecimen Collection and Analysis Within the BACPAC Research Program
title_full Protocol for Biospecimen Collection and Analysis Within the BACPAC Research Program
title_fullStr Protocol for Biospecimen Collection and Analysis Within the BACPAC Research Program
title_full_unstemmed Protocol for Biospecimen Collection and Analysis Within the BACPAC Research Program
title_short Protocol for Biospecimen Collection and Analysis Within the BACPAC Research Program
title_sort protocol for biospecimen collection and analysis within the bacpac research program
topic Original Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10403310/
https://www.ncbi.nlm.nih.gov/pubmed/36525387
http://dx.doi.org/10.1093/pm/pnac197
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