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FracAtlas: A Dataset for Fracture Classification, Localization and Segmentation of Musculoskeletal Radiographs

Digital radiography is one of the most common and cost-effective standards for the diagnosis of bone fractures. For such diagnoses expert intervention is required which is time-consuming and demands rigorous training. With the recent growth of computer vision algorithms, there is a surge of interest...

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Autores principales: Abedeen, Iftekharul, Rahman, Md. Ashiqur, Prottyasha, Fatema Zohra, Ahmed, Tasnim, Chowdhury, Tareque Mohmud, Shatabda, Swakkhar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10404222/
https://www.ncbi.nlm.nih.gov/pubmed/37543626
http://dx.doi.org/10.1038/s41597-023-02432-4
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author Abedeen, Iftekharul
Rahman, Md. Ashiqur
Prottyasha, Fatema Zohra
Ahmed, Tasnim
Chowdhury, Tareque Mohmud
Shatabda, Swakkhar
author_facet Abedeen, Iftekharul
Rahman, Md. Ashiqur
Prottyasha, Fatema Zohra
Ahmed, Tasnim
Chowdhury, Tareque Mohmud
Shatabda, Swakkhar
author_sort Abedeen, Iftekharul
collection PubMed
description Digital radiography is one of the most common and cost-effective standards for the diagnosis of bone fractures. For such diagnoses expert intervention is required which is time-consuming and demands rigorous training. With the recent growth of computer vision algorithms, there is a surge of interest in computer-aided diagnosis. The development of algorithms demands large datasets with proper annotations. Existing X-Ray datasets are either small or lack proper annotation, which hinders the development of machine-learning algorithms and evaluation of the relative performance of algorithms for classification, localization, and segmentation. We present FracAtlas, a new dataset of X-Ray scans curated from the images collected from 3 major hospitals in Bangladesh. Our dataset includes 4,083 images that have been manually annotated for bone fracture classification, localization, and segmentation with the help of 2 expert radiologists and an orthopedist using the open-source labeling platform, makesense.ai. There are 717 images with 922 instances of fractures. Each of the fracture instances has its own mask and bounding box, whereas the scans also have global labels for classification tasks. We believe the dataset will be a valuable resource for researchers interested in developing and evaluating machine learning algorithms for bone fracture diagnosis.
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spelling pubmed-104042222023-08-07 FracAtlas: A Dataset for Fracture Classification, Localization and Segmentation of Musculoskeletal Radiographs Abedeen, Iftekharul Rahman, Md. Ashiqur Prottyasha, Fatema Zohra Ahmed, Tasnim Chowdhury, Tareque Mohmud Shatabda, Swakkhar Sci Data Data Descriptor Digital radiography is one of the most common and cost-effective standards for the diagnosis of bone fractures. For such diagnoses expert intervention is required which is time-consuming and demands rigorous training. With the recent growth of computer vision algorithms, there is a surge of interest in computer-aided diagnosis. The development of algorithms demands large datasets with proper annotations. Existing X-Ray datasets are either small or lack proper annotation, which hinders the development of machine-learning algorithms and evaluation of the relative performance of algorithms for classification, localization, and segmentation. We present FracAtlas, a new dataset of X-Ray scans curated from the images collected from 3 major hospitals in Bangladesh. Our dataset includes 4,083 images that have been manually annotated for bone fracture classification, localization, and segmentation with the help of 2 expert radiologists and an orthopedist using the open-source labeling platform, makesense.ai. There are 717 images with 922 instances of fractures. Each of the fracture instances has its own mask and bounding box, whereas the scans also have global labels for classification tasks. We believe the dataset will be a valuable resource for researchers interested in developing and evaluating machine learning algorithms for bone fracture diagnosis. Nature Publishing Group UK 2023-08-05 /pmc/articles/PMC10404222/ /pubmed/37543626 http://dx.doi.org/10.1038/s41597-023-02432-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Abedeen, Iftekharul
Rahman, Md. Ashiqur
Prottyasha, Fatema Zohra
Ahmed, Tasnim
Chowdhury, Tareque Mohmud
Shatabda, Swakkhar
FracAtlas: A Dataset for Fracture Classification, Localization and Segmentation of Musculoskeletal Radiographs
title FracAtlas: A Dataset for Fracture Classification, Localization and Segmentation of Musculoskeletal Radiographs
title_full FracAtlas: A Dataset for Fracture Classification, Localization and Segmentation of Musculoskeletal Radiographs
title_fullStr FracAtlas: A Dataset for Fracture Classification, Localization and Segmentation of Musculoskeletal Radiographs
title_full_unstemmed FracAtlas: A Dataset for Fracture Classification, Localization and Segmentation of Musculoskeletal Radiographs
title_short FracAtlas: A Dataset for Fracture Classification, Localization and Segmentation of Musculoskeletal Radiographs
title_sort fracatlas: a dataset for fracture classification, localization and segmentation of musculoskeletal radiographs
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10404222/
https://www.ncbi.nlm.nih.gov/pubmed/37543626
http://dx.doi.org/10.1038/s41597-023-02432-4
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