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Human rotavirus strains circulating among children in the capital of China (2018–2022)_ predominance of G9P[8] and emergence ofG8P[8]
OBJECTIVE: This study aimed to update the genetic diversity of Rotavirus (RV) infections in children under five years old in Beijing, China. METHODS: A 5-year active hospital-based surveillance for sporadic acute gastroenteritis (AGE) from January 2018 to December 2022 in the capital of China was pe...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10404872/ https://www.ncbi.nlm.nih.gov/pubmed/37554825 http://dx.doi.org/10.1016/j.heliyon.2023.e18236 |
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author | Jiao, Yang Han, Taoli Qi, Xiao Gao, Yan Zhao, Jianhong Zhang, Yue Li, Beibei Zhang, Zheng Du, Jialiang Sun, Lingli |
author_facet | Jiao, Yang Han, Taoli Qi, Xiao Gao, Yan Zhao, Jianhong Zhang, Yue Li, Beibei Zhang, Zheng Du, Jialiang Sun, Lingli |
author_sort | Jiao, Yang |
collection | PubMed |
description | OBJECTIVE: This study aimed to update the genetic diversity of Rotavirus (RV) infections in children under five years old in Beijing, China. METHODS: A 5-year active hospital-based surveillance for sporadic acute gastroenteritis (AGE) from January 2018 to December 2022 in the capital of China was performed. A total of 748 fecal samples from AGE patients were collected for followed by RV antigen detection by ELSIA, RNA detection by reverse transcription PCR, G/P genotyping and phylogenetic analyzing. RESULTS: RV antigen was detected in 11.0% of the collected samples, with 54 samples confirmed to be RV RNA positive. G9 and G8 genotypes were identified in 43 (79.6%) and 7 (13.0%) samples, respectively, all of which were allocated to P[8]. The predominant G/P combination was G9P[8] (79.6%), following by G8P[8] (13.0%), G4P[8] (5.6%) and G3P[8] (1.9%). A significant change in G/P-type distribution was observed, with the G9P[8] being predominant from 2018 to 2021, followed by the emergence of an uncommon G8P[8] genotype, which was first reported in 2021 and became predominant in 2022. Blast analysis showed that one G1 isolate had a high similarity of 99.66% on nucleotide acid with RotaTeq vaccine strain with only one amino acid difference L150V. Additionally, one P[8] isolate was clustered into a branch together with RotaTeq vaccine strain G6P[8]. CONCLUSIONS: The study reveals that G8P[8] has become the predominant genotype in pediatric outpatients in China for the first time, indicating a significant change in the composition of RV genetic diversity. The importance of RVA genotyping in surveillance is emphasized, as it provides the basis for new vaccine application and future vaccine efficacy evaluation. |
format | Online Article Text |
id | pubmed-10404872 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-104048722023-08-08 Human rotavirus strains circulating among children in the capital of China (2018–2022)_ predominance of G9P[8] and emergence ofG8P[8] Jiao, Yang Han, Taoli Qi, Xiao Gao, Yan Zhao, Jianhong Zhang, Yue Li, Beibei Zhang, Zheng Du, Jialiang Sun, Lingli Heliyon Research Article OBJECTIVE: This study aimed to update the genetic diversity of Rotavirus (RV) infections in children under five years old in Beijing, China. METHODS: A 5-year active hospital-based surveillance for sporadic acute gastroenteritis (AGE) from January 2018 to December 2022 in the capital of China was performed. A total of 748 fecal samples from AGE patients were collected for followed by RV antigen detection by ELSIA, RNA detection by reverse transcription PCR, G/P genotyping and phylogenetic analyzing. RESULTS: RV antigen was detected in 11.0% of the collected samples, with 54 samples confirmed to be RV RNA positive. G9 and G8 genotypes were identified in 43 (79.6%) and 7 (13.0%) samples, respectively, all of which were allocated to P[8]. The predominant G/P combination was G9P[8] (79.6%), following by G8P[8] (13.0%), G4P[8] (5.6%) and G3P[8] (1.9%). A significant change in G/P-type distribution was observed, with the G9P[8] being predominant from 2018 to 2021, followed by the emergence of an uncommon G8P[8] genotype, which was first reported in 2021 and became predominant in 2022. Blast analysis showed that one G1 isolate had a high similarity of 99.66% on nucleotide acid with RotaTeq vaccine strain with only one amino acid difference L150V. Additionally, one P[8] isolate was clustered into a branch together with RotaTeq vaccine strain G6P[8]. CONCLUSIONS: The study reveals that G8P[8] has become the predominant genotype in pediatric outpatients in China for the first time, indicating a significant change in the composition of RV genetic diversity. The importance of RVA genotyping in surveillance is emphasized, as it provides the basis for new vaccine application and future vaccine efficacy evaluation. Elsevier 2023-07-25 /pmc/articles/PMC10404872/ /pubmed/37554825 http://dx.doi.org/10.1016/j.heliyon.2023.e18236 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Jiao, Yang Han, Taoli Qi, Xiao Gao, Yan Zhao, Jianhong Zhang, Yue Li, Beibei Zhang, Zheng Du, Jialiang Sun, Lingli Human rotavirus strains circulating among children in the capital of China (2018–2022)_ predominance of G9P[8] and emergence ofG8P[8] |
title | Human rotavirus strains circulating among children in the capital of China (2018–2022)_ predominance of G9P[8] and emergence ofG8P[8] |
title_full | Human rotavirus strains circulating among children in the capital of China (2018–2022)_ predominance of G9P[8] and emergence ofG8P[8] |
title_fullStr | Human rotavirus strains circulating among children in the capital of China (2018–2022)_ predominance of G9P[8] and emergence ofG8P[8] |
title_full_unstemmed | Human rotavirus strains circulating among children in the capital of China (2018–2022)_ predominance of G9P[8] and emergence ofG8P[8] |
title_short | Human rotavirus strains circulating among children in the capital of China (2018–2022)_ predominance of G9P[8] and emergence ofG8P[8] |
title_sort | human rotavirus strains circulating among children in the capital of china (2018–2022)_ predominance of g9p[8] and emergence ofg8p[8] |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10404872/ https://www.ncbi.nlm.nih.gov/pubmed/37554825 http://dx.doi.org/10.1016/j.heliyon.2023.e18236 |
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