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Plasma proteomic signatures of enteric permeability among hospitalized and community children in Kenya and Pakistan
We aimed to establish if enteric permeability was associated with similar biological processes in children recovering from hospitalization and relatively healthy children in the community. Extreme gradient boosted models predicting the lactulose-rhamnose ratio (LRR), a biomarker of enteric permeabil...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10405056/ https://www.ncbi.nlm.nih.gov/pubmed/37554451 http://dx.doi.org/10.1016/j.isci.2023.107294 |
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author | Tickell, Kirkby D. Denno, Donna M. Saleem, Ali Kazi, Zaubina Singa, Benson O. Achieng, Catherine Mutinda, Charles Richardson, Barbra A. Ásbjörnsdóttir, Kristjana H. Hawes, Stephen E. Berkley, James A. Walson, Judd L. |
author_facet | Tickell, Kirkby D. Denno, Donna M. Saleem, Ali Kazi, Zaubina Singa, Benson O. Achieng, Catherine Mutinda, Charles Richardson, Barbra A. Ásbjörnsdóttir, Kristjana H. Hawes, Stephen E. Berkley, James A. Walson, Judd L. |
author_sort | Tickell, Kirkby D. |
collection | PubMed |
description | We aimed to establish if enteric permeability was associated with similar biological processes in children recovering from hospitalization and relatively healthy children in the community. Extreme gradient boosted models predicting the lactulose-rhamnose ratio (LRR), a biomarker of enteric permeability, using 7,500 plasma proteins and 34 fecal biomarkers of enteric infection among 89 hospitalized and 60 community children aged 2–23 months were built. The R(2) values were calculated in test sets. The models performed better among community children (R(2): 0.27 [min-max: 0.19, 0.53]) than hospitalized children (R(2): 0.07 [min-max: 0.03, 0.11]). In the community, LRR was associated with biomarkers of humoral antimicrobial and cellular lipopolysaccharide responses and inversely associated with anti-inflammatory and innate immunological responses. Among hospitalized children, the selected biomarkers had few shared functions. This suggests enteric permeability among community children was associated with a host response to pathogens, but this association was not observed among hospitalized children. |
format | Online Article Text |
id | pubmed-10405056 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-104050562023-08-08 Plasma proteomic signatures of enteric permeability among hospitalized and community children in Kenya and Pakistan Tickell, Kirkby D. Denno, Donna M. Saleem, Ali Kazi, Zaubina Singa, Benson O. Achieng, Catherine Mutinda, Charles Richardson, Barbra A. Ásbjörnsdóttir, Kristjana H. Hawes, Stephen E. Berkley, James A. Walson, Judd L. iScience Article We aimed to establish if enteric permeability was associated with similar biological processes in children recovering from hospitalization and relatively healthy children in the community. Extreme gradient boosted models predicting the lactulose-rhamnose ratio (LRR), a biomarker of enteric permeability, using 7,500 plasma proteins and 34 fecal biomarkers of enteric infection among 89 hospitalized and 60 community children aged 2–23 months were built. The R(2) values were calculated in test sets. The models performed better among community children (R(2): 0.27 [min-max: 0.19, 0.53]) than hospitalized children (R(2): 0.07 [min-max: 0.03, 0.11]). In the community, LRR was associated with biomarkers of humoral antimicrobial and cellular lipopolysaccharide responses and inversely associated with anti-inflammatory and innate immunological responses. Among hospitalized children, the selected biomarkers had few shared functions. This suggests enteric permeability among community children was associated with a host response to pathogens, but this association was not observed among hospitalized children. Elsevier 2023-07-11 /pmc/articles/PMC10405056/ /pubmed/37554451 http://dx.doi.org/10.1016/j.isci.2023.107294 Text en © 2023 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Tickell, Kirkby D. Denno, Donna M. Saleem, Ali Kazi, Zaubina Singa, Benson O. Achieng, Catherine Mutinda, Charles Richardson, Barbra A. Ásbjörnsdóttir, Kristjana H. Hawes, Stephen E. Berkley, James A. Walson, Judd L. Plasma proteomic signatures of enteric permeability among hospitalized and community children in Kenya and Pakistan |
title | Plasma proteomic signatures of enteric permeability among hospitalized and community children in Kenya and Pakistan |
title_full | Plasma proteomic signatures of enteric permeability among hospitalized and community children in Kenya and Pakistan |
title_fullStr | Plasma proteomic signatures of enteric permeability among hospitalized and community children in Kenya and Pakistan |
title_full_unstemmed | Plasma proteomic signatures of enteric permeability among hospitalized and community children in Kenya and Pakistan |
title_short | Plasma proteomic signatures of enteric permeability among hospitalized and community children in Kenya and Pakistan |
title_sort | plasma proteomic signatures of enteric permeability among hospitalized and community children in kenya and pakistan |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10405056/ https://www.ncbi.nlm.nih.gov/pubmed/37554451 http://dx.doi.org/10.1016/j.isci.2023.107294 |
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