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Comprehensive analysis of circRNAs for N7‐methylguanosine methylation modification in human oral squamous cell carcinoma

N7‐methylguanosine (m7G) modification is closely related to the occurrence of tumors. However, the m7G modification of circRNAs in oral squamous cell carcinoma (OSCC) remains to be investigated. Methylated RNA immunoprecipitation sequencing (MeRIP‐seq) was used to measure the methylation levels of m...

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Autores principales: Sun, Dongyuan, Song, Ning, Li, Minmin, Chen, Xi, Zhang, Xinyue, Yu, Yang, Ying, Jicheng, Xu, Mengqi, Zheng, Wentian, Han, Chengbing, Ji, Honghai, Jiang, Yingying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10405248/
https://www.ncbi.nlm.nih.gov/pubmed/37554544
http://dx.doi.org/10.1096/fba.2023-00036
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author Sun, Dongyuan
Song, Ning
Li, Minmin
Chen, Xi
Zhang, Xinyue
Yu, Yang
Ying, Jicheng
Xu, Mengqi
Zheng, Wentian
Han, Chengbing
Ji, Honghai
Jiang, Yingying
author_facet Sun, Dongyuan
Song, Ning
Li, Minmin
Chen, Xi
Zhang, Xinyue
Yu, Yang
Ying, Jicheng
Xu, Mengqi
Zheng, Wentian
Han, Chengbing
Ji, Honghai
Jiang, Yingying
author_sort Sun, Dongyuan
collection PubMed
description N7‐methylguanosine (m7G) modification is closely related to the occurrence of tumors. However, the m7G modification of circRNAs in oral squamous cell carcinoma (OSCC) remains to be investigated. Methylated RNA immunoprecipitation sequencing (MeRIP‐seq) was used to measure the methylation levels of m7G and identify m7G sites in circRNAs in human OSCC and normal tissues. The host genes of differentially methylated and differentially expressed circRNAs were analyzed by Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses, and circRNA–miRNA–mRNA networks were predicted using the miRanda and miRDB databases. The analysis identified 2348 m7G peaks in 624 circRNAs in OSCC tissues. In addition, the source of m7G‐methylated circRNAs in OSCC was mainly the sense overlap region compared with normal tissues. The most conserved m7G motif in OSCC tissues was CCUGU, whereas the most conserved motif in normal tissues was RCCUG (R = G/A). Importantly, GO enrichment and KEGG pathway analysis showed that the host genes of differentially methylated and differentially expressed circRNAs were involved in many cellular biological functions. Furthermore, the significantly differentially expressed circRNAs were analyzed to predict the circRNA–miRNA–mRNA networks. This study revealed the whole profile of circRNAs of differential m7G methylation in OSCC and suggests that m7G‐modified circRNAs may impact the development of OSCC.
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spelling pubmed-104052482023-08-08 Comprehensive analysis of circRNAs for N7‐methylguanosine methylation modification in human oral squamous cell carcinoma Sun, Dongyuan Song, Ning Li, Minmin Chen, Xi Zhang, Xinyue Yu, Yang Ying, Jicheng Xu, Mengqi Zheng, Wentian Han, Chengbing Ji, Honghai Jiang, Yingying FASEB Bioadv Research Articles N7‐methylguanosine (m7G) modification is closely related to the occurrence of tumors. However, the m7G modification of circRNAs in oral squamous cell carcinoma (OSCC) remains to be investigated. Methylated RNA immunoprecipitation sequencing (MeRIP‐seq) was used to measure the methylation levels of m7G and identify m7G sites in circRNAs in human OSCC and normal tissues. The host genes of differentially methylated and differentially expressed circRNAs were analyzed by Gene Ontology (GO) enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses, and circRNA–miRNA–mRNA networks were predicted using the miRanda and miRDB databases. The analysis identified 2348 m7G peaks in 624 circRNAs in OSCC tissues. In addition, the source of m7G‐methylated circRNAs in OSCC was mainly the sense overlap region compared with normal tissues. The most conserved m7G motif in OSCC tissues was CCUGU, whereas the most conserved motif in normal tissues was RCCUG (R = G/A). Importantly, GO enrichment and KEGG pathway analysis showed that the host genes of differentially methylated and differentially expressed circRNAs were involved in many cellular biological functions. Furthermore, the significantly differentially expressed circRNAs were analyzed to predict the circRNA–miRNA–mRNA networks. This study revealed the whole profile of circRNAs of differential m7G methylation in OSCC and suggests that m7G‐modified circRNAs may impact the development of OSCC. John Wiley and Sons Inc. 2023-06-01 /pmc/articles/PMC10405248/ /pubmed/37554544 http://dx.doi.org/10.1096/fba.2023-00036 Text en © 2023 The Authors. FASEB BioAdvances published by Wiley Periodicals LLC on behalf of The Federation of American Societies for Experimental Biology. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Sun, Dongyuan
Song, Ning
Li, Minmin
Chen, Xi
Zhang, Xinyue
Yu, Yang
Ying, Jicheng
Xu, Mengqi
Zheng, Wentian
Han, Chengbing
Ji, Honghai
Jiang, Yingying
Comprehensive analysis of circRNAs for N7‐methylguanosine methylation modification in human oral squamous cell carcinoma
title Comprehensive analysis of circRNAs for N7‐methylguanosine methylation modification in human oral squamous cell carcinoma
title_full Comprehensive analysis of circRNAs for N7‐methylguanosine methylation modification in human oral squamous cell carcinoma
title_fullStr Comprehensive analysis of circRNAs for N7‐methylguanosine methylation modification in human oral squamous cell carcinoma
title_full_unstemmed Comprehensive analysis of circRNAs for N7‐methylguanosine methylation modification in human oral squamous cell carcinoma
title_short Comprehensive analysis of circRNAs for N7‐methylguanosine methylation modification in human oral squamous cell carcinoma
title_sort comprehensive analysis of circrnas for n7‐methylguanosine methylation modification in human oral squamous cell carcinoma
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10405248/
https://www.ncbi.nlm.nih.gov/pubmed/37554544
http://dx.doi.org/10.1096/fba.2023-00036
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