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Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography

Time-resolved crystallography enables the visualization of protein molecular motion during a reaction. Although light is often used to initiate reactions in time-resolved crystallography, only a small number of proteins can be activated by light. However, many biological reactions can be triggered b...

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Autores principales: Vakili, Mohammad, Han, Huijong, Schmidt, Christina, Wrona, Agnieszka, Kloos, Marco, de Diego, Iñaki, Dörner, Katerina, Geng, Tian, Kim, Chan, Koua, Faisal H. M., Melo, Diogo V. M., Rappas, Mathieu, Round, Adam, Round, Ekaterina, Sikorski, Marcin, Valerio, Joana, Zhou, Tiankun, Lorenzen, Kristina, Schulz, Joachim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10405586/
https://www.ncbi.nlm.nih.gov/pubmed/37555221
http://dx.doi.org/10.1107/S1600576723004405
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author Vakili, Mohammad
Han, Huijong
Schmidt, Christina
Wrona, Agnieszka
Kloos, Marco
de Diego, Iñaki
Dörner, Katerina
Geng, Tian
Kim, Chan
Koua, Faisal H. M.
Melo, Diogo V. M.
Rappas, Mathieu
Round, Adam
Round, Ekaterina
Sikorski, Marcin
Valerio, Joana
Zhou, Tiankun
Lorenzen, Kristina
Schulz, Joachim
author_facet Vakili, Mohammad
Han, Huijong
Schmidt, Christina
Wrona, Agnieszka
Kloos, Marco
de Diego, Iñaki
Dörner, Katerina
Geng, Tian
Kim, Chan
Koua, Faisal H. M.
Melo, Diogo V. M.
Rappas, Mathieu
Round, Adam
Round, Ekaterina
Sikorski, Marcin
Valerio, Joana
Zhou, Tiankun
Lorenzen, Kristina
Schulz, Joachim
author_sort Vakili, Mohammad
collection PubMed
description Time-resolved crystallography enables the visualization of protein molecular motion during a reaction. Although light is often used to initiate reactions in time-resolved crystallography, only a small number of proteins can be activated by light. However, many biological reactions can be triggered by the interaction between proteins and ligands. The sample delivery method presented here uses a mix-and-extrude approach based on 3D-printed microchannels in conjunction with a micronozzle. The diffusive mixing enables the study of the dynamics of samples in viscous media. The device design allows mixing of the ligands and protein crystals in 2 to 20 s. The device characterization using a model system (fluorescence quenching of iq-mEmerald proteins by copper ions) demonstrated that ligand and protein crystals, each within lipidic cubic phase, can be mixed efficiently. The potential of this approach for time-resolved membrane protein crystallography to support the development of new drugs is discussed.
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spelling pubmed-104055862023-08-08 Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography Vakili, Mohammad Han, Huijong Schmidt, Christina Wrona, Agnieszka Kloos, Marco de Diego, Iñaki Dörner, Katerina Geng, Tian Kim, Chan Koua, Faisal H. M. Melo, Diogo V. M. Rappas, Mathieu Round, Adam Round, Ekaterina Sikorski, Marcin Valerio, Joana Zhou, Tiankun Lorenzen, Kristina Schulz, Joachim J Appl Crystallogr Research Papers Time-resolved crystallography enables the visualization of protein molecular motion during a reaction. Although light is often used to initiate reactions in time-resolved crystallography, only a small number of proteins can be activated by light. However, many biological reactions can be triggered by the interaction between proteins and ligands. The sample delivery method presented here uses a mix-and-extrude approach based on 3D-printed microchannels in conjunction with a micronozzle. The diffusive mixing enables the study of the dynamics of samples in viscous media. The device design allows mixing of the ligands and protein crystals in 2 to 20 s. The device characterization using a model system (fluorescence quenching of iq-mEmerald proteins by copper ions) demonstrated that ligand and protein crystals, each within lipidic cubic phase, can be mixed efficiently. The potential of this approach for time-resolved membrane protein crystallography to support the development of new drugs is discussed. International Union of Crystallography 2023-06-12 /pmc/articles/PMC10405586/ /pubmed/37555221 http://dx.doi.org/10.1107/S1600576723004405 Text en © Mohammad Vakili et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Vakili, Mohammad
Han, Huijong
Schmidt, Christina
Wrona, Agnieszka
Kloos, Marco
de Diego, Iñaki
Dörner, Katerina
Geng, Tian
Kim, Chan
Koua, Faisal H. M.
Melo, Diogo V. M.
Rappas, Mathieu
Round, Adam
Round, Ekaterina
Sikorski, Marcin
Valerio, Joana
Zhou, Tiankun
Lorenzen, Kristina
Schulz, Joachim
Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography
title Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography
title_full Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography
title_fullStr Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography
title_full_unstemmed Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography
title_short Mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography
title_sort mix-and-extrude: high-viscosity sample injection towards time-resolved protein crystallography
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10405586/
https://www.ncbi.nlm.nih.gov/pubmed/37555221
http://dx.doi.org/10.1107/S1600576723004405
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