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TEMGYM Basic: transmission electron microscopy simulation software for teaching and training of microscope operation
An interactive simulation of a transmission electron microscope (TEM) called TEMGYM Basic is developed here, which enables users to understand how to operate and control an electron beam without the need to access an instrument. TEMGYM Basic allows users to familiarize themselves with alignment proc...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10405588/ https://www.ncbi.nlm.nih.gov/pubmed/37555218 http://dx.doi.org/10.1107/S1600576723005174 |
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author | Landers, David Clancy, Ian Weber, Dieter Dunin-Borkowski, Rafal E. Stewart, Andrew |
author_facet | Landers, David Clancy, Ian Weber, Dieter Dunin-Borkowski, Rafal E. Stewart, Andrew |
author_sort | Landers, David |
collection | PubMed |
description | An interactive simulation of a transmission electron microscope (TEM) called TEMGYM Basic is developed here, which enables users to understand how to operate and control an electron beam without the need to access an instrument. TEMGYM Basic allows users to familiarize themselves with alignment procedures offline, reducing the time and money required to become a proficient TEM operator. In addition to teaching the basics of electron beam alignments, the software enables users to create bespoke microscope configurations and develop an understanding of how to operate the configurations without sitting at a microscope. TEMGYM Basic also creates static ray diagram figures for a given lens configuration. The available components include apertures, lenses, quadrupoles, deflectors and biprisms. The software design uses first-order ray transfer matrices to calculate ray paths through each electron microscope component, and the program is developed entirely in Python to facilitate compatibility with machine-learning packages for future exploration of automated control. |
format | Online Article Text |
id | pubmed-10405588 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-104055882023-08-08 TEMGYM Basic: transmission electron microscopy simulation software for teaching and training of microscope operation Landers, David Clancy, Ian Weber, Dieter Dunin-Borkowski, Rafal E. Stewart, Andrew J Appl Crystallogr Computer Programs An interactive simulation of a transmission electron microscope (TEM) called TEMGYM Basic is developed here, which enables users to understand how to operate and control an electron beam without the need to access an instrument. TEMGYM Basic allows users to familiarize themselves with alignment procedures offline, reducing the time and money required to become a proficient TEM operator. In addition to teaching the basics of electron beam alignments, the software enables users to create bespoke microscope configurations and develop an understanding of how to operate the configurations without sitting at a microscope. TEMGYM Basic also creates static ray diagram figures for a given lens configuration. The available components include apertures, lenses, quadrupoles, deflectors and biprisms. The software design uses first-order ray transfer matrices to calculate ray paths through each electron microscope component, and the program is developed entirely in Python to facilitate compatibility with machine-learning packages for future exploration of automated control. International Union of Crystallography 2023-07-14 /pmc/articles/PMC10405588/ /pubmed/37555218 http://dx.doi.org/10.1107/S1600576723005174 Text en © David Landers et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Computer Programs Landers, David Clancy, Ian Weber, Dieter Dunin-Borkowski, Rafal E. Stewart, Andrew TEMGYM Basic: transmission electron microscopy simulation software for teaching and training of microscope operation |
title |
TEMGYM Basic: transmission electron microscopy simulation software for teaching and training of microscope operation |
title_full |
TEMGYM Basic: transmission electron microscopy simulation software for teaching and training of microscope operation |
title_fullStr |
TEMGYM Basic: transmission electron microscopy simulation software for teaching and training of microscope operation |
title_full_unstemmed |
TEMGYM Basic: transmission electron microscopy simulation software for teaching and training of microscope operation |
title_short |
TEMGYM Basic: transmission electron microscopy simulation software for teaching and training of microscope operation |
title_sort | temgym basic: transmission electron microscopy simulation software for teaching and training of microscope operation |
topic | Computer Programs |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10405588/ https://www.ncbi.nlm.nih.gov/pubmed/37555218 http://dx.doi.org/10.1107/S1600576723005174 |
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