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Label-efficient deep semantic segmentation of intracranial hemorrhages in CT-scans

Intracranial hemorrhage (ICH) is a common finding in traumatic brain injury (TBI) and computed tomography (CT) is considered the gold standard for diagnosis. Automated detection of ICH provides clinical value in diagnostics and in the ability to feed robust quantification measures into future predic...

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Autores principales: Spahr, Antoine, Ståhle, Jennifer, Wang, Chunliang, Kaijser, Magnus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406224/
https://www.ncbi.nlm.nih.gov/pubmed/37554648
http://dx.doi.org/10.3389/fnimg.2023.1157565
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author Spahr, Antoine
Ståhle, Jennifer
Wang, Chunliang
Kaijser, Magnus
author_facet Spahr, Antoine
Ståhle, Jennifer
Wang, Chunliang
Kaijser, Magnus
author_sort Spahr, Antoine
collection PubMed
description Intracranial hemorrhage (ICH) is a common finding in traumatic brain injury (TBI) and computed tomography (CT) is considered the gold standard for diagnosis. Automated detection of ICH provides clinical value in diagnostics and in the ability to feed robust quantification measures into future prediction models. Several studies have explored ICH detection and segmentation but the research process is somewhat hindered due to a lack of open large and labeled datasets, making validation and comparison almost impossible. The complexity of the task is further challenged by the heterogeneity of ICH patterns, requiring a large number of labeled data to train robust and reliable models. Consequently, due to the labeling cost, there is a need for label-efficient algorithms that can exploit easily available unlabeled or weakly-labeled data. Our aims for this study were to evaluate whether transfer learning can improve ICH segmentation performance and to compare a variety of transfer learning approaches that harness unlabeled and weakly-labeled data. Three self-supervised and three weakly-supervised transfer learning approaches were explored. To be used in our comparisons, we also manually labeled a dataset of 51 CT scans. We demonstrate that transfer learning improves ICH segmentation performance on both datasets. Unlike most studies on ICH segmentation our work relies exclusively on publicly available datasets, allowing for easy comparison of performances in future studies. To further promote comparison between studies, we also present a new public dataset of ICH-labeled CT scans, Seq-CQ500.
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spelling pubmed-104062242023-08-08 Label-efficient deep semantic segmentation of intracranial hemorrhages in CT-scans Spahr, Antoine Ståhle, Jennifer Wang, Chunliang Kaijser, Magnus Front Neuroimaging Neuroimaging Intracranial hemorrhage (ICH) is a common finding in traumatic brain injury (TBI) and computed tomography (CT) is considered the gold standard for diagnosis. Automated detection of ICH provides clinical value in diagnostics and in the ability to feed robust quantification measures into future prediction models. Several studies have explored ICH detection and segmentation but the research process is somewhat hindered due to a lack of open large and labeled datasets, making validation and comparison almost impossible. The complexity of the task is further challenged by the heterogeneity of ICH patterns, requiring a large number of labeled data to train robust and reliable models. Consequently, due to the labeling cost, there is a need for label-efficient algorithms that can exploit easily available unlabeled or weakly-labeled data. Our aims for this study were to evaluate whether transfer learning can improve ICH segmentation performance and to compare a variety of transfer learning approaches that harness unlabeled and weakly-labeled data. Three self-supervised and three weakly-supervised transfer learning approaches were explored. To be used in our comparisons, we also manually labeled a dataset of 51 CT scans. We demonstrate that transfer learning improves ICH segmentation performance on both datasets. Unlike most studies on ICH segmentation our work relies exclusively on publicly available datasets, allowing for easy comparison of performances in future studies. To further promote comparison between studies, we also present a new public dataset of ICH-labeled CT scans, Seq-CQ500. Frontiers Media S.A. 2023-07-25 /pmc/articles/PMC10406224/ /pubmed/37554648 http://dx.doi.org/10.3389/fnimg.2023.1157565 Text en Copyright © 2023 Spahr, Ståhle, Wang and Kaijser. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroimaging
Spahr, Antoine
Ståhle, Jennifer
Wang, Chunliang
Kaijser, Magnus
Label-efficient deep semantic segmentation of intracranial hemorrhages in CT-scans
title Label-efficient deep semantic segmentation of intracranial hemorrhages in CT-scans
title_full Label-efficient deep semantic segmentation of intracranial hemorrhages in CT-scans
title_fullStr Label-efficient deep semantic segmentation of intracranial hemorrhages in CT-scans
title_full_unstemmed Label-efficient deep semantic segmentation of intracranial hemorrhages in CT-scans
title_short Label-efficient deep semantic segmentation of intracranial hemorrhages in CT-scans
title_sort label-efficient deep semantic segmentation of intracranial hemorrhages in ct-scans
topic Neuroimaging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406224/
https://www.ncbi.nlm.nih.gov/pubmed/37554648
http://dx.doi.org/10.3389/fnimg.2023.1157565
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