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Applying Joint Graph Embedding to Study Alzheimer’s Neurodegeneration Patterns in Volumetric Data
Neurodegeneration measured through volumetry in MRI is recognized as a potential Alzheimer’s Disease (AD) biomarker, but its utility is limited by lack of specificity. Quantifying spatial patterns of neurodegeneration on a whole brain scale rather than locally may help address this. In this work, we...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406695/ https://www.ncbi.nlm.nih.gov/pubmed/37314682 http://dx.doi.org/10.1007/s12021-023-09634-6 |
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author | He, Rosemary Tward, Daniel |
author_facet | He, Rosemary Tward, Daniel |
author_sort | He, Rosemary |
collection | PubMed |
description | Neurodegeneration measured through volumetry in MRI is recognized as a potential Alzheimer’s Disease (AD) biomarker, but its utility is limited by lack of specificity. Quantifying spatial patterns of neurodegeneration on a whole brain scale rather than locally may help address this. In this work, we turn to network based analyses and extend a graph embedding algorithm to study morphometric connectivity from volume-change correlations measured with structural MRI on the timescale of years. We model our data with the multiple random eigengraphs framework, as well as modify and implement a multigraph embedding algorithm proposed earlier to estimate a low dimensional embedding of the networks. Our version of the algorithm guarantees meaningful finite-sample results and estimates maximum likelihood edge probabilities from population-specific network modes and subject-specific loadings. Furthermore, we propose and implement a novel statistical testing procedure to analyze group differences after accounting for confounders and locate significant structures during AD neurodegeneration. Family-wise error rate is controlled at 5% using permutation testing on the maximum statistic. We show that results from our analysis reveal networks dominated by known structures associated to AD neurodegeneration, indicating the framework has promise for studying AD. Furthermore, we find network-structure tuples that are not found with traditional methods in the field. |
format | Online Article Text |
id | pubmed-10406695 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-104066952023-08-09 Applying Joint Graph Embedding to Study Alzheimer’s Neurodegeneration Patterns in Volumetric Data He, Rosemary Tward, Daniel Neuroinformatics Research Neurodegeneration measured through volumetry in MRI is recognized as a potential Alzheimer’s Disease (AD) biomarker, but its utility is limited by lack of specificity. Quantifying spatial patterns of neurodegeneration on a whole brain scale rather than locally may help address this. In this work, we turn to network based analyses and extend a graph embedding algorithm to study morphometric connectivity from volume-change correlations measured with structural MRI on the timescale of years. We model our data with the multiple random eigengraphs framework, as well as modify and implement a multigraph embedding algorithm proposed earlier to estimate a low dimensional embedding of the networks. Our version of the algorithm guarantees meaningful finite-sample results and estimates maximum likelihood edge probabilities from population-specific network modes and subject-specific loadings. Furthermore, we propose and implement a novel statistical testing procedure to analyze group differences after accounting for confounders and locate significant structures during AD neurodegeneration. Family-wise error rate is controlled at 5% using permutation testing on the maximum statistic. We show that results from our analysis reveal networks dominated by known structures associated to AD neurodegeneration, indicating the framework has promise for studying AD. Furthermore, we find network-structure tuples that are not found with traditional methods in the field. Springer US 2023-06-14 2023 /pmc/articles/PMC10406695/ /pubmed/37314682 http://dx.doi.org/10.1007/s12021-023-09634-6 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research He, Rosemary Tward, Daniel Applying Joint Graph Embedding to Study Alzheimer’s Neurodegeneration Patterns in Volumetric Data |
title | Applying Joint Graph Embedding to Study Alzheimer’s Neurodegeneration Patterns in Volumetric Data |
title_full | Applying Joint Graph Embedding to Study Alzheimer’s Neurodegeneration Patterns in Volumetric Data |
title_fullStr | Applying Joint Graph Embedding to Study Alzheimer’s Neurodegeneration Patterns in Volumetric Data |
title_full_unstemmed | Applying Joint Graph Embedding to Study Alzheimer’s Neurodegeneration Patterns in Volumetric Data |
title_short | Applying Joint Graph Embedding to Study Alzheimer’s Neurodegeneration Patterns in Volumetric Data |
title_sort | applying joint graph embedding to study alzheimer’s neurodegeneration patterns in volumetric data |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406695/ https://www.ncbi.nlm.nih.gov/pubmed/37314682 http://dx.doi.org/10.1007/s12021-023-09634-6 |
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