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Deep Learning Body Region Classification of MRI and CT Examinations

This study demonstrates the high performance of deep learning in identification of body regions covering the entire human body from magnetic resonance (MR) and computed tomography (CT) axial images across diverse acquisition protocols and modality manufacturers. Pixel-based analysis of anatomy conta...

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Autores principales: Raffy, Philippe, Pambrun, Jean-François, Kumar, Ashish, Dubois, David, Patti, Jay Waldron, Cairns, Robyn Alexandra, Young, Ryan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407003/
https://www.ncbi.nlm.nih.gov/pubmed/36894697
http://dx.doi.org/10.1007/s10278-022-00767-9
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author Raffy, Philippe
Pambrun, Jean-François
Kumar, Ashish
Dubois, David
Patti, Jay Waldron
Cairns, Robyn Alexandra
Young, Ryan
author_facet Raffy, Philippe
Pambrun, Jean-François
Kumar, Ashish
Dubois, David
Patti, Jay Waldron
Cairns, Robyn Alexandra
Young, Ryan
author_sort Raffy, Philippe
collection PubMed
description This study demonstrates the high performance of deep learning in identification of body regions covering the entire human body from magnetic resonance (MR) and computed tomography (CT) axial images across diverse acquisition protocols and modality manufacturers. Pixel-based analysis of anatomy contained in image sets can provide accurate anatomic labeling. For this purpose, a convolutional neural network (CNN)–based classifier was developed to identify body regions in CT and MRI studies. Seventeen CT (18 MRI) body regions covering the entire human body were defined for the classification task. Three retrospective datasets were built for the AI model training, validation, and testing, with a balanced distribution of studies per body region. The test datasets originated from a different healthcare network than the train and validation datasets. Sensitivity and specificity of the classifier was evaluated for patient age, patient sex, institution, scanner manufacturer, contrast, slice thickness, MRI sequence, and CT kernel. The data included a retrospective cohort of 2891 anonymized CT cases (training, 1804 studies; validation, 602 studies; test, 485 studies) and 3339 anonymized MRI cases (training, 1911 studies; validation, 636 studies; test, 792 studies). Twenty-seven institutions from primary care hospitals, community hospitals, and imaging centers contributed to the test datasets. The data included cases of all sexes in equal proportions and subjects aged from 18 years old to + 90 years old. Image-level weighted sensitivity of 92.5% (92.1–92.8) for CT and 92.3% (92.0–92.5) for MRI and weighted specificity of 99.4% (99.4–99.5) for CT and 99.2% (99.1–99.2) for MRI were achieved. Deep learning models can classify CT and MR images by body region including lower and upper extremities with high accuracy. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10278-022-00767-9.
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spelling pubmed-104070032023-08-09 Deep Learning Body Region Classification of MRI and CT Examinations Raffy, Philippe Pambrun, Jean-François Kumar, Ashish Dubois, David Patti, Jay Waldron Cairns, Robyn Alexandra Young, Ryan J Digit Imaging Original Paper This study demonstrates the high performance of deep learning in identification of body regions covering the entire human body from magnetic resonance (MR) and computed tomography (CT) axial images across diverse acquisition protocols and modality manufacturers. Pixel-based analysis of anatomy contained in image sets can provide accurate anatomic labeling. For this purpose, a convolutional neural network (CNN)–based classifier was developed to identify body regions in CT and MRI studies. Seventeen CT (18 MRI) body regions covering the entire human body were defined for the classification task. Three retrospective datasets were built for the AI model training, validation, and testing, with a balanced distribution of studies per body region. The test datasets originated from a different healthcare network than the train and validation datasets. Sensitivity and specificity of the classifier was evaluated for patient age, patient sex, institution, scanner manufacturer, contrast, slice thickness, MRI sequence, and CT kernel. The data included a retrospective cohort of 2891 anonymized CT cases (training, 1804 studies; validation, 602 studies; test, 485 studies) and 3339 anonymized MRI cases (training, 1911 studies; validation, 636 studies; test, 792 studies). Twenty-seven institutions from primary care hospitals, community hospitals, and imaging centers contributed to the test datasets. The data included cases of all sexes in equal proportions and subjects aged from 18 years old to + 90 years old. Image-level weighted sensitivity of 92.5% (92.1–92.8) for CT and 92.3% (92.0–92.5) for MRI and weighted specificity of 99.4% (99.4–99.5) for CT and 99.2% (99.1–99.2) for MRI were achieved. Deep learning models can classify CT and MR images by body region including lower and upper extremities with high accuracy. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10278-022-00767-9. Springer International Publishing 2023-03-09 2023-08 /pmc/articles/PMC10407003/ /pubmed/36894697 http://dx.doi.org/10.1007/s10278-022-00767-9 Text en © Change Healthcare LLC 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Original Paper
Raffy, Philippe
Pambrun, Jean-François
Kumar, Ashish
Dubois, David
Patti, Jay Waldron
Cairns, Robyn Alexandra
Young, Ryan
Deep Learning Body Region Classification of MRI and CT Examinations
title Deep Learning Body Region Classification of MRI and CT Examinations
title_full Deep Learning Body Region Classification of MRI and CT Examinations
title_fullStr Deep Learning Body Region Classification of MRI and CT Examinations
title_full_unstemmed Deep Learning Body Region Classification of MRI and CT Examinations
title_short Deep Learning Body Region Classification of MRI and CT Examinations
title_sort deep learning body region classification of mri and ct examinations
topic Original Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407003/
https://www.ncbi.nlm.nih.gov/pubmed/36894697
http://dx.doi.org/10.1007/s10278-022-00767-9
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