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Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma

Purpose: To evaluate the diagnostic and prognostic utility of E2F transcription factors (E2Fs) in thyroid carcinoma (THCA) and their association with immune infiltration. Methods: The transcription and protein levels of E2Fs in THCA tissues were examined using the R language and the Human Protein At...

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Autores principales: Fu, Xinghao, Zhou, Xing, Ji, Feihong, He, Qi, Qiu, Xinguang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407799/
https://www.ncbi.nlm.nih.gov/pubmed/37560385
http://dx.doi.org/10.3389/fgene.2023.1215984
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author Fu, Xinghao
Zhou, Xing
Ji, Feihong
He, Qi
Qiu, Xinguang
author_facet Fu, Xinghao
Zhou, Xing
Ji, Feihong
He, Qi
Qiu, Xinguang
author_sort Fu, Xinghao
collection PubMed
description Purpose: To evaluate the diagnostic and prognostic utility of E2F transcription factors (E2Fs) in thyroid carcinoma (THCA) and their association with immune infiltration. Methods: The transcription and protein levels of E2Fs in THCA tissues were examined using the R language and the Human Protein Atlas (HPA) database in this research. We utilized the UALCAN and GEPIA2 databases to analyze the association between the level of E2Fs and the clinicopathological features of THCA. The prognostic utility of E2F expression in THCA was studied using the R language and the Gene Set Cancer Analysis (GSCA) database. Over-representation analysis (ORA) and gene set enrichment analysis (GSEA) were employed to analyze the effect of E2F family members. The TISIDB database and Tumor Immune Estimation Resource (TIMER) database were utilized to investigate the relationship between E2F expression and the level of immune infiltration in thyroid cancer. Results: E2Fs are highly conserved in thyroid carcinoma and rarely mutated. E2Fs are strongly expressed in THCA and are highly related with the clinicopathological stage of THCA. Patients with THCA have a poor prognosis when E2Fs are highly expressed. The function of E2Fs in THCA may be closely related to the renin–angiotensin system (Ras) signaling pathway, platelet-derived growth factor (PDGF) signaling pathway, apoptosis, and immune response. With regard to the immune infiltration, E2F expression and tumor-infiltrating lymphocytes exhibited a positive connection. Conclusion: The level of E2Fs is connected with the prognosis and immune infiltration level in THCA, revealing that E2Fs may be a prognostic and immune infiltration cell marker in THCA patients.
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spelling pubmed-104077992023-08-09 Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma Fu, Xinghao Zhou, Xing Ji, Feihong He, Qi Qiu, Xinguang Front Genet Genetics Purpose: To evaluate the diagnostic and prognostic utility of E2F transcription factors (E2Fs) in thyroid carcinoma (THCA) and their association with immune infiltration. Methods: The transcription and protein levels of E2Fs in THCA tissues were examined using the R language and the Human Protein Atlas (HPA) database in this research. We utilized the UALCAN and GEPIA2 databases to analyze the association between the level of E2Fs and the clinicopathological features of THCA. The prognostic utility of E2F expression in THCA was studied using the R language and the Gene Set Cancer Analysis (GSCA) database. Over-representation analysis (ORA) and gene set enrichment analysis (GSEA) were employed to analyze the effect of E2F family members. The TISIDB database and Tumor Immune Estimation Resource (TIMER) database were utilized to investigate the relationship between E2F expression and the level of immune infiltration in thyroid cancer. Results: E2Fs are highly conserved in thyroid carcinoma and rarely mutated. E2Fs are strongly expressed in THCA and are highly related with the clinicopathological stage of THCA. Patients with THCA have a poor prognosis when E2Fs are highly expressed. The function of E2Fs in THCA may be closely related to the renin–angiotensin system (Ras) signaling pathway, platelet-derived growth factor (PDGF) signaling pathway, apoptosis, and immune response. With regard to the immune infiltration, E2F expression and tumor-infiltrating lymphocytes exhibited a positive connection. Conclusion: The level of E2Fs is connected with the prognosis and immune infiltration level in THCA, revealing that E2Fs may be a prognostic and immune infiltration cell marker in THCA patients. Frontiers Media S.A. 2023-07-25 /pmc/articles/PMC10407799/ /pubmed/37560385 http://dx.doi.org/10.3389/fgene.2023.1215984 Text en Copyright © 2023 Fu, Zhou, Ji, He and Qiu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Fu, Xinghao
Zhou, Xing
Ji, Feihong
He, Qi
Qiu, Xinguang
Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma
title Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma
title_full Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma
title_fullStr Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma
title_full_unstemmed Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma
title_short Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma
title_sort systematic analysis of the prognosis and immune infiltration of e2fs in thyroid carcinoma
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407799/
https://www.ncbi.nlm.nih.gov/pubmed/37560385
http://dx.doi.org/10.3389/fgene.2023.1215984
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