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Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma
Purpose: To evaluate the diagnostic and prognostic utility of E2F transcription factors (E2Fs) in thyroid carcinoma (THCA) and their association with immune infiltration. Methods: The transcription and protein levels of E2Fs in THCA tissues were examined using the R language and the Human Protein At...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407799/ https://www.ncbi.nlm.nih.gov/pubmed/37560385 http://dx.doi.org/10.3389/fgene.2023.1215984 |
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author | Fu, Xinghao Zhou, Xing Ji, Feihong He, Qi Qiu, Xinguang |
author_facet | Fu, Xinghao Zhou, Xing Ji, Feihong He, Qi Qiu, Xinguang |
author_sort | Fu, Xinghao |
collection | PubMed |
description | Purpose: To evaluate the diagnostic and prognostic utility of E2F transcription factors (E2Fs) in thyroid carcinoma (THCA) and their association with immune infiltration. Methods: The transcription and protein levels of E2Fs in THCA tissues were examined using the R language and the Human Protein Atlas (HPA) database in this research. We utilized the UALCAN and GEPIA2 databases to analyze the association between the level of E2Fs and the clinicopathological features of THCA. The prognostic utility of E2F expression in THCA was studied using the R language and the Gene Set Cancer Analysis (GSCA) database. Over-representation analysis (ORA) and gene set enrichment analysis (GSEA) were employed to analyze the effect of E2F family members. The TISIDB database and Tumor Immune Estimation Resource (TIMER) database were utilized to investigate the relationship between E2F expression and the level of immune infiltration in thyroid cancer. Results: E2Fs are highly conserved in thyroid carcinoma and rarely mutated. E2Fs are strongly expressed in THCA and are highly related with the clinicopathological stage of THCA. Patients with THCA have a poor prognosis when E2Fs are highly expressed. The function of E2Fs in THCA may be closely related to the renin–angiotensin system (Ras) signaling pathway, platelet-derived growth factor (PDGF) signaling pathway, apoptosis, and immune response. With regard to the immune infiltration, E2F expression and tumor-infiltrating lymphocytes exhibited a positive connection. Conclusion: The level of E2Fs is connected with the prognosis and immune infiltration level in THCA, revealing that E2Fs may be a prognostic and immune infiltration cell marker in THCA patients. |
format | Online Article Text |
id | pubmed-10407799 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104077992023-08-09 Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma Fu, Xinghao Zhou, Xing Ji, Feihong He, Qi Qiu, Xinguang Front Genet Genetics Purpose: To evaluate the diagnostic and prognostic utility of E2F transcription factors (E2Fs) in thyroid carcinoma (THCA) and their association with immune infiltration. Methods: The transcription and protein levels of E2Fs in THCA tissues were examined using the R language and the Human Protein Atlas (HPA) database in this research. We utilized the UALCAN and GEPIA2 databases to analyze the association between the level of E2Fs and the clinicopathological features of THCA. The prognostic utility of E2F expression in THCA was studied using the R language and the Gene Set Cancer Analysis (GSCA) database. Over-representation analysis (ORA) and gene set enrichment analysis (GSEA) were employed to analyze the effect of E2F family members. The TISIDB database and Tumor Immune Estimation Resource (TIMER) database were utilized to investigate the relationship between E2F expression and the level of immune infiltration in thyroid cancer. Results: E2Fs are highly conserved in thyroid carcinoma and rarely mutated. E2Fs are strongly expressed in THCA and are highly related with the clinicopathological stage of THCA. Patients with THCA have a poor prognosis when E2Fs are highly expressed. The function of E2Fs in THCA may be closely related to the renin–angiotensin system (Ras) signaling pathway, platelet-derived growth factor (PDGF) signaling pathway, apoptosis, and immune response. With regard to the immune infiltration, E2F expression and tumor-infiltrating lymphocytes exhibited a positive connection. Conclusion: The level of E2Fs is connected with the prognosis and immune infiltration level in THCA, revealing that E2Fs may be a prognostic and immune infiltration cell marker in THCA patients. Frontiers Media S.A. 2023-07-25 /pmc/articles/PMC10407799/ /pubmed/37560385 http://dx.doi.org/10.3389/fgene.2023.1215984 Text en Copyright © 2023 Fu, Zhou, Ji, He and Qiu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Fu, Xinghao Zhou, Xing Ji, Feihong He, Qi Qiu, Xinguang Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma |
title | Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma |
title_full | Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma |
title_fullStr | Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma |
title_full_unstemmed | Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma |
title_short | Systematic analysis of the prognosis and immune infiltration of E2Fs in thyroid carcinoma |
title_sort | systematic analysis of the prognosis and immune infiltration of e2fs in thyroid carcinoma |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10407799/ https://www.ncbi.nlm.nih.gov/pubmed/37560385 http://dx.doi.org/10.3389/fgene.2023.1215984 |
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