The complete mitochondrial genome of water flea Ceriodaphnia dubia (Crustacea: Cladocera) NIES strain

Water flea Ceriodaphnia dubia has been widely used for risk assessments of chemicals and environmental contamination. In this study, the complete mitochondrial genome (mitogenome) of this species NIES strain was determined using short-read high throughput and long-read sequencing technologies. The m...

Descripción completa

Detalles Bibliográficos
Autores principales: Hiki, Kyoshiro, Oka, Kenta, Nakajima, Nobuyoshi, Watanabe, Haruna, Yamamoto, Hiroshi, Yamagishi, Takahiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2023
Materias:
Mitogenome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10408566/
https://www.ncbi.nlm.nih.gov/pubmed/37560176
http://dx.doi.org/10.1080/23802359.2023.2241663
_version_ 1785086189391314944
author Hiki, Kyoshiro
Oka, Kenta
Nakajima, Nobuyoshi
Watanabe, Haruna
Yamamoto, Hiroshi
Yamagishi, Takahiro
author_facet Hiki, Kyoshiro
Oka, Kenta
Nakajima, Nobuyoshi
Watanabe, Haruna
Yamamoto, Hiroshi
Yamagishi, Takahiro
author_sort Hiki, Kyoshiro
collection PubMed
description Water flea Ceriodaphnia dubia has been widely used for risk assessments of chemicals and environmental contamination. In this study, the complete mitochondrial genome (mitogenome) of this species NIES strain was determined using short-read high throughput and long-read sequencing technologies. The mitogenome of C. dubia was 15,170 bp in length and consisted of 13 protein-coding genes (PCGs), 2 ribosomal RNAs (rRNAs), and 22 transfer RNAs (tRNAs). The gene order was identical to the pattern conserved across crustaceans. The complete mitogenome of the NIES strain will serve as genetical reference in ecological risk assessments in Japan, as well as resources for future phylogenetical studies using cladocerans.
format Online
Article
Text
id pubmed-10408566
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-104085662023-08-09 The complete mitochondrial genome of water flea Ceriodaphnia dubia (Crustacea: Cladocera) NIES strain Hiki, Kyoshiro Oka, Kenta Nakajima, Nobuyoshi Watanabe, Haruna Yamamoto, Hiroshi Yamagishi, Takahiro Mitochondrial DNA B Resour Mitogenome Report Water flea Ceriodaphnia dubia has been widely used for risk assessments of chemicals and environmental contamination. In this study, the complete mitochondrial genome (mitogenome) of this species NIES strain was determined using short-read high throughput and long-read sequencing technologies. The mitogenome of C. dubia was 15,170 bp in length and consisted of 13 protein-coding genes (PCGs), 2 ribosomal RNAs (rRNAs), and 22 transfer RNAs (tRNAs). The gene order was identical to the pattern conserved across crustaceans. The complete mitogenome of the NIES strain will serve as genetical reference in ecological risk assessments in Japan, as well as resources for future phylogenetical studies using cladocerans. Taylor & Francis 2023-08-07 /pmc/articles/PMC10408566/ /pubmed/37560176 http://dx.doi.org/10.1080/23802359.2023.2241663 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.
spellingShingle Mitogenome Report
Hiki, Kyoshiro
Oka, Kenta
Nakajima, Nobuyoshi
Watanabe, Haruna
Yamamoto, Hiroshi
Yamagishi, Takahiro
The complete mitochondrial genome of water flea Ceriodaphnia dubia (Crustacea: Cladocera) NIES strain
title The complete mitochondrial genome of water flea Ceriodaphnia dubia (Crustacea: Cladocera) NIES strain
title_full The complete mitochondrial genome of water flea Ceriodaphnia dubia (Crustacea: Cladocera) NIES strain
title_fullStr The complete mitochondrial genome of water flea Ceriodaphnia dubia (Crustacea: Cladocera) NIES strain
title_full_unstemmed The complete mitochondrial genome of water flea Ceriodaphnia dubia (Crustacea: Cladocera) NIES strain
title_short The complete mitochondrial genome of water flea Ceriodaphnia dubia (Crustacea: Cladocera) NIES strain
title_sort complete mitochondrial genome of water flea ceriodaphnia dubia (crustacea: cladocera) nies strain
topic Mitogenome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10408566/
https://www.ncbi.nlm.nih.gov/pubmed/37560176
http://dx.doi.org/10.1080/23802359.2023.2241663
work_keys_str_mv AT hikikyoshiro thecompletemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT okakenta thecompletemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT nakajimanobuyoshi thecompletemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT watanabeharuna thecompletemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT yamamotohiroshi thecompletemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT yamagishitakahiro thecompletemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT hikikyoshiro completemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT okakenta completemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT nakajimanobuyoshi completemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT watanabeharuna completemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT yamamotohiroshi completemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain
AT yamagishitakahiro completemitochondrialgenomeofwaterfleaceriodaphniadubiacrustaceacladoceraniesstrain

Ejemplares similares