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Moving beyond the desktop: prospects for practical bioimage analysis via the web

As biological imaging continues to rapidly advance, it results in increasingly complex image data, necessitating a reevaluation of conventional bioimage analysis methods and their accessibility. This perspective underscores our belief that a transition from desktop-based tools to web-based bioimage...

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Detalles Bibliográficos
Autores principales: Ouyang, Wei, Eliceiri, Kevin W., Cimini, Beth A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10409478/
https://www.ncbi.nlm.nih.gov/pubmed/37560357
http://dx.doi.org/10.3389/fbinf.2023.1233748
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author Ouyang, Wei
Eliceiri, Kevin W.
Cimini, Beth A.
author_facet Ouyang, Wei
Eliceiri, Kevin W.
Cimini, Beth A.
author_sort Ouyang, Wei
collection PubMed
description As biological imaging continues to rapidly advance, it results in increasingly complex image data, necessitating a reevaluation of conventional bioimage analysis methods and their accessibility. This perspective underscores our belief that a transition from desktop-based tools to web-based bioimage analysis could unlock immense opportunities for improved accessibility, enhanced collaboration, and streamlined workflows. We outline the potential benefits, such as reduced local computational demands and solutions to common challenges, including software installation issues and limited reproducibility. Furthermore, we explore the present state of web-based tools, hurdles in implementation, and the significance of collective involvement from the scientific community in driving this transition. In acknowledging the potential roadblocks and complexity of data management, we suggest a combined approach of selective prototyping and large-scale workflow application for optimal usage. Embracing web-based bioimage analysis could pave the way for the life sciences community to accelerate biological research, offering a robust platform for a more collaborative, efficient, and democratized science.
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spelling pubmed-104094782023-08-09 Moving beyond the desktop: prospects for practical bioimage analysis via the web Ouyang, Wei Eliceiri, Kevin W. Cimini, Beth A. Front Bioinform Bioinformatics As biological imaging continues to rapidly advance, it results in increasingly complex image data, necessitating a reevaluation of conventional bioimage analysis methods and their accessibility. This perspective underscores our belief that a transition from desktop-based tools to web-based bioimage analysis could unlock immense opportunities for improved accessibility, enhanced collaboration, and streamlined workflows. We outline the potential benefits, such as reduced local computational demands and solutions to common challenges, including software installation issues and limited reproducibility. Furthermore, we explore the present state of web-based tools, hurdles in implementation, and the significance of collective involvement from the scientific community in driving this transition. In acknowledging the potential roadblocks and complexity of data management, we suggest a combined approach of selective prototyping and large-scale workflow application for optimal usage. Embracing web-based bioimage analysis could pave the way for the life sciences community to accelerate biological research, offering a robust platform for a more collaborative, efficient, and democratized science. Frontiers Media S.A. 2023-07-25 /pmc/articles/PMC10409478/ /pubmed/37560357 http://dx.doi.org/10.3389/fbinf.2023.1233748 Text en Copyright © 2023 Ouyang, Eliceiri and Cimini. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioinformatics
Ouyang, Wei
Eliceiri, Kevin W.
Cimini, Beth A.
Moving beyond the desktop: prospects for practical bioimage analysis via the web
title Moving beyond the desktop: prospects for practical bioimage analysis via the web
title_full Moving beyond the desktop: prospects for practical bioimage analysis via the web
title_fullStr Moving beyond the desktop: prospects for practical bioimage analysis via the web
title_full_unstemmed Moving beyond the desktop: prospects for practical bioimage analysis via the web
title_short Moving beyond the desktop: prospects for practical bioimage analysis via the web
title_sort moving beyond the desktop: prospects for practical bioimage analysis via the web
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10409478/
https://www.ncbi.nlm.nih.gov/pubmed/37560357
http://dx.doi.org/10.3389/fbinf.2023.1233748
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