Cargando…

MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations

Mechanistic cardiac electrophysiology models allow for personalized simulations of the electrical activity in the heart and the ensuing electrocardiogram (ECG) on the body surface. As such, synthetic signals possess known ground truth labels of the underlying disease and can be employed for validati...

Descripción completa

Detalles Bibliográficos
Autores principales: Gillette, Karli, Gsell, Matthias A. F., Nagel, Claudia, Bender, Jule, Winkler, Benjamin, Williams, Steven E., Bär, Markus, Schäffter, Tobias, Dössel, Olaf, Plank, Gernot, Loewe, Axel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10409805/
https://www.ncbi.nlm.nih.gov/pubmed/37553349
http://dx.doi.org/10.1038/s41597-023-02416-4
_version_ 1785086325662154752
author Gillette, Karli
Gsell, Matthias A. F.
Nagel, Claudia
Bender, Jule
Winkler, Benjamin
Williams, Steven E.
Bär, Markus
Schäffter, Tobias
Dössel, Olaf
Plank, Gernot
Loewe, Axel
author_facet Gillette, Karli
Gsell, Matthias A. F.
Nagel, Claudia
Bender, Jule
Winkler, Benjamin
Williams, Steven E.
Bär, Markus
Schäffter, Tobias
Dössel, Olaf
Plank, Gernot
Loewe, Axel
author_sort Gillette, Karli
collection PubMed
description Mechanistic cardiac electrophysiology models allow for personalized simulations of the electrical activity in the heart and the ensuing electrocardiogram (ECG) on the body surface. As such, synthetic signals possess known ground truth labels of the underlying disease and can be employed for validation of machine learning ECG analysis tools in addition to clinical signals. Recently, synthetic ECGs were used to enrich sparse clinical data or even replace them completely during training leading to improved performance on real-world clinical test data. We thus generated a novel synthetic database comprising a total of 16,900 12 lead ECGs based on electrophysiological simulations equally distributed into healthy control and 7 pathology classes. The pathological case of myocardial infraction had 6 sub-classes. A comparison of extracted features between the virtual cohort and a publicly available clinical ECG database demonstrated that the synthetic signals represent clinical ECGs for healthy and pathological subpopulations with high fidelity. The ECG database is split into training, validation, and test folds for development and objective assessment of novel machine learning algorithms.
format Online
Article
Text
id pubmed-10409805
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-104098052023-08-10 MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations Gillette, Karli Gsell, Matthias A. F. Nagel, Claudia Bender, Jule Winkler, Benjamin Williams, Steven E. Bär, Markus Schäffter, Tobias Dössel, Olaf Plank, Gernot Loewe, Axel Sci Data Data Descriptor Mechanistic cardiac electrophysiology models allow for personalized simulations of the electrical activity in the heart and the ensuing electrocardiogram (ECG) on the body surface. As such, synthetic signals possess known ground truth labels of the underlying disease and can be employed for validation of machine learning ECG analysis tools in addition to clinical signals. Recently, synthetic ECGs were used to enrich sparse clinical data or even replace them completely during training leading to improved performance on real-world clinical test data. We thus generated a novel synthetic database comprising a total of 16,900 12 lead ECGs based on electrophysiological simulations equally distributed into healthy control and 7 pathology classes. The pathological case of myocardial infraction had 6 sub-classes. A comparison of extracted features between the virtual cohort and a publicly available clinical ECG database demonstrated that the synthetic signals represent clinical ECGs for healthy and pathological subpopulations with high fidelity. The ECG database is split into training, validation, and test folds for development and objective assessment of novel machine learning algorithms. Nature Publishing Group UK 2023-08-08 /pmc/articles/PMC10409805/ /pubmed/37553349 http://dx.doi.org/10.1038/s41597-023-02416-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Gillette, Karli
Gsell, Matthias A. F.
Nagel, Claudia
Bender, Jule
Winkler, Benjamin
Williams, Steven E.
Bär, Markus
Schäffter, Tobias
Dössel, Olaf
Plank, Gernot
Loewe, Axel
MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations
title MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations
title_full MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations
title_fullStr MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations
title_full_unstemmed MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations
title_short MedalCare-XL: 16,900 healthy and pathological synthetic 12 lead ECGs from electrophysiological simulations
title_sort medalcare-xl: 16,900 healthy and pathological synthetic 12 lead ecgs from electrophysiological simulations
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10409805/
https://www.ncbi.nlm.nih.gov/pubmed/37553349
http://dx.doi.org/10.1038/s41597-023-02416-4
work_keys_str_mv AT gillettekarli medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT gsellmatthiasaf medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT nagelclaudia medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT benderjule medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT winklerbenjamin medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT williamsstevene medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT barmarkus medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT schafftertobias medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT dosselolaf medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT plankgernot medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations
AT loeweaxel medalcarexl16900healthyandpathologicalsynthetic12leadecgsfromelectrophysiologicalsimulations