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Digital staining facilitates biomedical microscopy
Traditional staining of biological specimens for microscopic imaging entails time-consuming, laborious, and costly procedures, in addition to producing inconsistent labeling and causing irreversible sample damage. In recent years, computational “virtual” staining using deep learning techniques has e...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10411189/ https://www.ncbi.nlm.nih.gov/pubmed/37564725 http://dx.doi.org/10.3389/fbinf.2023.1243663 |
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author | Fanous, Michael John Pillar, Nir Ozcan, Aydogan |
author_facet | Fanous, Michael John Pillar, Nir Ozcan, Aydogan |
author_sort | Fanous, Michael John |
collection | PubMed |
description | Traditional staining of biological specimens for microscopic imaging entails time-consuming, laborious, and costly procedures, in addition to producing inconsistent labeling and causing irreversible sample damage. In recent years, computational “virtual” staining using deep learning techniques has evolved into a robust and comprehensive application for streamlining the staining process without typical histochemical staining-related drawbacks. Such virtual staining techniques can also be combined with neural networks designed to correct various microscopy aberrations, such as out-of-focus or motion blur artifacts, and improve upon diffracted-limited resolution. Here, we highlight how such methods lead to a host of new opportunities that can significantly improve both sample preparation and imaging in biomedical microscopy. |
format | Online Article Text |
id | pubmed-10411189 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104111892023-08-10 Digital staining facilitates biomedical microscopy Fanous, Michael John Pillar, Nir Ozcan, Aydogan Front Bioinform Bioinformatics Traditional staining of biological specimens for microscopic imaging entails time-consuming, laborious, and costly procedures, in addition to producing inconsistent labeling and causing irreversible sample damage. In recent years, computational “virtual” staining using deep learning techniques has evolved into a robust and comprehensive application for streamlining the staining process without typical histochemical staining-related drawbacks. Such virtual staining techniques can also be combined with neural networks designed to correct various microscopy aberrations, such as out-of-focus or motion blur artifacts, and improve upon diffracted-limited resolution. Here, we highlight how such methods lead to a host of new opportunities that can significantly improve both sample preparation and imaging in biomedical microscopy. Frontiers Media S.A. 2023-07-26 /pmc/articles/PMC10411189/ /pubmed/37564725 http://dx.doi.org/10.3389/fbinf.2023.1243663 Text en Copyright © 2023 Fanous, Pillar and Ozcan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioinformatics Fanous, Michael John Pillar, Nir Ozcan, Aydogan Digital staining facilitates biomedical microscopy |
title | Digital staining facilitates biomedical microscopy |
title_full | Digital staining facilitates biomedical microscopy |
title_fullStr | Digital staining facilitates biomedical microscopy |
title_full_unstemmed | Digital staining facilitates biomedical microscopy |
title_short | Digital staining facilitates biomedical microscopy |
title_sort | digital staining facilitates biomedical microscopy |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10411189/ https://www.ncbi.nlm.nih.gov/pubmed/37564725 http://dx.doi.org/10.3389/fbinf.2023.1243663 |
work_keys_str_mv | AT fanousmichaeljohn digitalstainingfacilitatesbiomedicalmicroscopy AT pillarnir digitalstainingfacilitatesbiomedicalmicroscopy AT ozcanaydogan digitalstainingfacilitatesbiomedicalmicroscopy |