Cargando…
Prediction of the occurrence of leprosy reactions based on Bayesian networks
INTRODUCTION: Leprosy reactions (LR) are severe episodes of intense activation of the host inflammatory response of uncertain etiology, today the leading cause of permanent nerve damage in leprosy patients. Several genetic and non-genetic risk factors for LR have been described; however, there are l...
Autores principales: | , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10411956/ https://www.ncbi.nlm.nih.gov/pubmed/37564037 http://dx.doi.org/10.3389/fmed.2023.1233220 |
_version_ | 1785086776115724288 |
---|---|
author | de Andrade Rodrigues, Rafael Saraiva Heise, Eduardo Ferreira José Hartmann, Luis Felipe Rocha, Guilherme Eduardo Olandoski, Marcia de Araújo Stefani, Mariane Martins Latini, Ana Carla Pereira Soares, Cleverson Teixeira Belone, Andrea Rosa, Patrícia Sammarco de Andrade Pontes, Maria Araci de Sá Gonçalves, Heitor Cruz, Rossilene Penna, Maria Lúcia Fernandes Carvalho, Deborah Ribeiro Fava, Vinicius Medeiros Bührer-Sékula, Samira Penna, Gerson Oliveira Moro, Claudia Maria Cabral Nievola, Julio Cesar Mira, Marcelo Távora |
author_facet | de Andrade Rodrigues, Rafael Saraiva Heise, Eduardo Ferreira José Hartmann, Luis Felipe Rocha, Guilherme Eduardo Olandoski, Marcia de Araújo Stefani, Mariane Martins Latini, Ana Carla Pereira Soares, Cleverson Teixeira Belone, Andrea Rosa, Patrícia Sammarco de Andrade Pontes, Maria Araci de Sá Gonçalves, Heitor Cruz, Rossilene Penna, Maria Lúcia Fernandes Carvalho, Deborah Ribeiro Fava, Vinicius Medeiros Bührer-Sékula, Samira Penna, Gerson Oliveira Moro, Claudia Maria Cabral Nievola, Julio Cesar Mira, Marcelo Távora |
author_sort | de Andrade Rodrigues, Rafael Saraiva |
collection | PubMed |
description | INTRODUCTION: Leprosy reactions (LR) are severe episodes of intense activation of the host inflammatory response of uncertain etiology, today the leading cause of permanent nerve damage in leprosy patients. Several genetic and non-genetic risk factors for LR have been described; however, there are limited attempts to combine this information to estimate the risk of a leprosy patient developing LR. Here we present an artificial intelligence (AI)-based system that can assess LR risk using clinical, demographic, and genetic data. METHODS: The study includes four datasets from different regions of Brazil, totalizing 1,450 leprosy patients followed prospectively for at least 2 years to assess the occurrence of LR. Data mining using WEKA software was performed following a two-step protocol to select the variables included in the AI system, based on Bayesian Networks, and developed using the NETICA software. RESULTS: Analysis of the complete database resulted in a system able to estimate LR risk with 82.7% accuracy, 79.3% sensitivity, and 86.2% specificity. When using only databases for which host genetic information associated with LR was included, the performance increased to 87.7% accuracy, 85.7% sensitivity, and 89.4% specificity. CONCLUSION: We produced an easy-to-use, online, free-access system that identifies leprosy patients at risk of developing LR. Risk assessment of LR for individual patients may detect candidates for close monitoring, with a potentially positive impact on the prevention of permanent disabilities, the quality of life of the patients, and upon leprosy control programs. |
format | Online Article Text |
id | pubmed-10411956 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104119562023-08-10 Prediction of the occurrence of leprosy reactions based on Bayesian networks de Andrade Rodrigues, Rafael Saraiva Heise, Eduardo Ferreira José Hartmann, Luis Felipe Rocha, Guilherme Eduardo Olandoski, Marcia de Araújo Stefani, Mariane Martins Latini, Ana Carla Pereira Soares, Cleverson Teixeira Belone, Andrea Rosa, Patrícia Sammarco de Andrade Pontes, Maria Araci de Sá Gonçalves, Heitor Cruz, Rossilene Penna, Maria Lúcia Fernandes Carvalho, Deborah Ribeiro Fava, Vinicius Medeiros Bührer-Sékula, Samira Penna, Gerson Oliveira Moro, Claudia Maria Cabral Nievola, Julio Cesar Mira, Marcelo Távora Front Med (Lausanne) Medicine INTRODUCTION: Leprosy reactions (LR) are severe episodes of intense activation of the host inflammatory response of uncertain etiology, today the leading cause of permanent nerve damage in leprosy patients. Several genetic and non-genetic risk factors for LR have been described; however, there are limited attempts to combine this information to estimate the risk of a leprosy patient developing LR. Here we present an artificial intelligence (AI)-based system that can assess LR risk using clinical, demographic, and genetic data. METHODS: The study includes four datasets from different regions of Brazil, totalizing 1,450 leprosy patients followed prospectively for at least 2 years to assess the occurrence of LR. Data mining using WEKA software was performed following a two-step protocol to select the variables included in the AI system, based on Bayesian Networks, and developed using the NETICA software. RESULTS: Analysis of the complete database resulted in a system able to estimate LR risk with 82.7% accuracy, 79.3% sensitivity, and 86.2% specificity. When using only databases for which host genetic information associated with LR was included, the performance increased to 87.7% accuracy, 85.7% sensitivity, and 89.4% specificity. CONCLUSION: We produced an easy-to-use, online, free-access system that identifies leprosy patients at risk of developing LR. Risk assessment of LR for individual patients may detect candidates for close monitoring, with a potentially positive impact on the prevention of permanent disabilities, the quality of life of the patients, and upon leprosy control programs. Frontiers Media S.A. 2023-07-26 /pmc/articles/PMC10411956/ /pubmed/37564037 http://dx.doi.org/10.3389/fmed.2023.1233220 Text en Copyright © 2023 de Andrade Rodrigues, Heise, Hartmann, Rocha, Olandoski, de Araújo Stefani, Latini, Soares, Belone, Rosa, de Andrade Pontes, de Sá Gonçalves, Cruz, Penna, Carvalho, Fava, Bührer-Sékula, Penna, Moro, Nievola and Mira. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Medicine de Andrade Rodrigues, Rafael Saraiva Heise, Eduardo Ferreira José Hartmann, Luis Felipe Rocha, Guilherme Eduardo Olandoski, Marcia de Araújo Stefani, Mariane Martins Latini, Ana Carla Pereira Soares, Cleverson Teixeira Belone, Andrea Rosa, Patrícia Sammarco de Andrade Pontes, Maria Araci de Sá Gonçalves, Heitor Cruz, Rossilene Penna, Maria Lúcia Fernandes Carvalho, Deborah Ribeiro Fava, Vinicius Medeiros Bührer-Sékula, Samira Penna, Gerson Oliveira Moro, Claudia Maria Cabral Nievola, Julio Cesar Mira, Marcelo Távora Prediction of the occurrence of leprosy reactions based on Bayesian networks |
title | Prediction of the occurrence of leprosy reactions based on Bayesian networks |
title_full | Prediction of the occurrence of leprosy reactions based on Bayesian networks |
title_fullStr | Prediction of the occurrence of leprosy reactions based on Bayesian networks |
title_full_unstemmed | Prediction of the occurrence of leprosy reactions based on Bayesian networks |
title_short | Prediction of the occurrence of leprosy reactions based on Bayesian networks |
title_sort | prediction of the occurrence of leprosy reactions based on bayesian networks |
topic | Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10411956/ https://www.ncbi.nlm.nih.gov/pubmed/37564037 http://dx.doi.org/10.3389/fmed.2023.1233220 |
work_keys_str_mv | AT deandraderodriguesrafaelsaraiva predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT heiseeduardoferreirajose predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT hartmannluisfelipe predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT rochaguilhermeeduardo predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT olandoskimarcia predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT dearaujostefanimarianemartins predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT latinianacarlapereira predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT soarescleversonteixeira predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT beloneandrea predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT rosapatriciasammarco predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT deandradepontesmariaaraci predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT desagoncalvesheitor predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT cruzrossilene predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT pennamarialuciafernandes predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT carvalhodeborahribeiro predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT favaviniciusmedeiros predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT buhrersekulasamira predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT pennagersonoliveira predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT moroclaudiamariacabral predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT nievolajuliocesar predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks AT miramarcelotavora predictionoftheoccurrenceofleprosyreactionsbasedonbayesiannetworks |