Cargando…
TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma
Background: Clear cell renal cell carcinoma (ccRCC) constitutes the commonest kidney malignancy. Immunogenic cell death (ICD) is a type of regulated cell death (RCD), which sufficiently activates adaptive immunity. However, ICD's involvement in cancer development is unclear, as well as the asso...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Ivyspring International Publisher
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10414050/ https://www.ncbi.nlm.nih.gov/pubmed/37576399 http://dx.doi.org/10.7150/jca.84502 |
_version_ | 1785087262017454080 |
---|---|
author | Zhang, Zhentao Wang, Shuo Lu, Ye Xia, Demeng Liu, Ying |
author_facet | Zhang, Zhentao Wang, Shuo Lu, Ye Xia, Demeng Liu, Ying |
author_sort | Zhang, Zhentao |
collection | PubMed |
description | Background: Clear cell renal cell carcinoma (ccRCC) constitutes the commonest kidney malignancy. Immunogenic cell death (ICD) is a type of regulated cell death (RCD), which sufficiently activates adaptive immunity. However, ICD's involvement in cancer development is unclear, as well as the associations of ICD effectors with ccRCC prognosis. Methods: RNA-sequencing expression profiles of ccRCC in The Cancer Genome Atlas (TCGA) and normal samples in Gene Expression Omnibus (GEO) were comprehensively investigated. Consensus clustering analysis was employed to determine subgroup members linked to ICD-related genes. Functional enrichment analysis was utilized for the examination of TLR4's biological role, and in vitro cellular assays were utilized for further confirmation. We also used Kaplan-Meier (KM) and Cox regression analyses to assess TLR4's prognostic value. Finally, “CIBERSORT” was employed for immune score evaluation. Results: The associations of ICD effectors with ccRCC prognosis were examined based on TCGA, and 12 genes showed upregulation in ccRCC tissue specimens. Meanwhile, ccRCC cases with upregulated ICD-related genes had increased overall survival. Among these ICD-related genes, TLR4 was selected for subsequent analysis. TLR4 was upregulated in ccRCC samples and independently predicted ccRCC. TLR4 also enhanced the proliferative, migratory and invasive abilities in cultured ccRCC cells. Moreover, TLR4 had close relationships with immune checkpoints and infiltrated immune cells. ccRCC cases with elevated TLR4 expression had prolonged overall survival, suggesting a prognostic value for TLR4. Finally, a pan-cancer analysis demonstrated TLR4 had differential expression in various malignancies in comparison with normal tissue samples. Conclusions: This study revealed prognostic values for ICD-associated genes, particularly TLR4, and experimentally validated the inducing effects of TLR4 on ccRCC progression in vitro. We also demonstrated the associations of TLR4 with immune cell infiltration, providing a novel strategy for prognostic evaluation and a novel therapeutic target in ccRCC. |
format | Online Article Text |
id | pubmed-10414050 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-104140502023-08-11 TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma Zhang, Zhentao Wang, Shuo Lu, Ye Xia, Demeng Liu, Ying J Cancer Research Paper Background: Clear cell renal cell carcinoma (ccRCC) constitutes the commonest kidney malignancy. Immunogenic cell death (ICD) is a type of regulated cell death (RCD), which sufficiently activates adaptive immunity. However, ICD's involvement in cancer development is unclear, as well as the associations of ICD effectors with ccRCC prognosis. Methods: RNA-sequencing expression profiles of ccRCC in The Cancer Genome Atlas (TCGA) and normal samples in Gene Expression Omnibus (GEO) were comprehensively investigated. Consensus clustering analysis was employed to determine subgroup members linked to ICD-related genes. Functional enrichment analysis was utilized for the examination of TLR4's biological role, and in vitro cellular assays were utilized for further confirmation. We also used Kaplan-Meier (KM) and Cox regression analyses to assess TLR4's prognostic value. Finally, “CIBERSORT” was employed for immune score evaluation. Results: The associations of ICD effectors with ccRCC prognosis were examined based on TCGA, and 12 genes showed upregulation in ccRCC tissue specimens. Meanwhile, ccRCC cases with upregulated ICD-related genes had increased overall survival. Among these ICD-related genes, TLR4 was selected for subsequent analysis. TLR4 was upregulated in ccRCC samples and independently predicted ccRCC. TLR4 also enhanced the proliferative, migratory and invasive abilities in cultured ccRCC cells. Moreover, TLR4 had close relationships with immune checkpoints and infiltrated immune cells. ccRCC cases with elevated TLR4 expression had prolonged overall survival, suggesting a prognostic value for TLR4. Finally, a pan-cancer analysis demonstrated TLR4 had differential expression in various malignancies in comparison with normal tissue samples. Conclusions: This study revealed prognostic values for ICD-associated genes, particularly TLR4, and experimentally validated the inducing effects of TLR4 on ccRCC progression in vitro. We also demonstrated the associations of TLR4 with immune cell infiltration, providing a novel strategy for prognostic evaluation and a novel therapeutic target in ccRCC. Ivyspring International Publisher 2023-07-16 /pmc/articles/PMC10414050/ /pubmed/37576399 http://dx.doi.org/10.7150/jca.84502 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Zhang, Zhentao Wang, Shuo Lu, Ye Xia, Demeng Liu, Ying TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma |
title | TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma |
title_full | TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma |
title_fullStr | TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma |
title_full_unstemmed | TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma |
title_short | TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma |
title_sort | tlr4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10414050/ https://www.ncbi.nlm.nih.gov/pubmed/37576399 http://dx.doi.org/10.7150/jca.84502 |
work_keys_str_mv | AT zhangzhentao tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma AT wangshuo tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma AT luye tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma AT xiademeng tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma AT liuying tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma |