Cargando…

TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma

Background: Clear cell renal cell carcinoma (ccRCC) constitutes the commonest kidney malignancy. Immunogenic cell death (ICD) is a type of regulated cell death (RCD), which sufficiently activates adaptive immunity. However, ICD's involvement in cancer development is unclear, as well as the asso...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Zhentao, Wang, Shuo, Lu, Ye, Xia, Demeng, Liu, Ying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10414050/
https://www.ncbi.nlm.nih.gov/pubmed/37576399
http://dx.doi.org/10.7150/jca.84502
_version_ 1785087262017454080
author Zhang, Zhentao
Wang, Shuo
Lu, Ye
Xia, Demeng
Liu, Ying
author_facet Zhang, Zhentao
Wang, Shuo
Lu, Ye
Xia, Demeng
Liu, Ying
author_sort Zhang, Zhentao
collection PubMed
description Background: Clear cell renal cell carcinoma (ccRCC) constitutes the commonest kidney malignancy. Immunogenic cell death (ICD) is a type of regulated cell death (RCD), which sufficiently activates adaptive immunity. However, ICD's involvement in cancer development is unclear, as well as the associations of ICD effectors with ccRCC prognosis. Methods: RNA-sequencing expression profiles of ccRCC in The Cancer Genome Atlas (TCGA) and normal samples in Gene Expression Omnibus (GEO) were comprehensively investigated. Consensus clustering analysis was employed to determine subgroup members linked to ICD-related genes. Functional enrichment analysis was utilized for the examination of TLR4's biological role, and in vitro cellular assays were utilized for further confirmation. We also used Kaplan-Meier (KM) and Cox regression analyses to assess TLR4's prognostic value. Finally, “CIBERSORT” was employed for immune score evaluation. Results: The associations of ICD effectors with ccRCC prognosis were examined based on TCGA, and 12 genes showed upregulation in ccRCC tissue specimens. Meanwhile, ccRCC cases with upregulated ICD-related genes had increased overall survival. Among these ICD-related genes, TLR4 was selected for subsequent analysis. TLR4 was upregulated in ccRCC samples and independently predicted ccRCC. TLR4 also enhanced the proliferative, migratory and invasive abilities in cultured ccRCC cells. Moreover, TLR4 had close relationships with immune checkpoints and infiltrated immune cells. ccRCC cases with elevated TLR4 expression had prolonged overall survival, suggesting a prognostic value for TLR4. Finally, a pan-cancer analysis demonstrated TLR4 had differential expression in various malignancies in comparison with normal tissue samples. Conclusions: This study revealed prognostic values for ICD-associated genes, particularly TLR4, and experimentally validated the inducing effects of TLR4 on ccRCC progression in vitro. We also demonstrated the associations of TLR4 with immune cell infiltration, providing a novel strategy for prognostic evaluation and a novel therapeutic target in ccRCC.
format Online
Article
Text
id pubmed-10414050
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Ivyspring International Publisher
record_format MEDLINE/PubMed
spelling pubmed-104140502023-08-11 TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma Zhang, Zhentao Wang, Shuo Lu, Ye Xia, Demeng Liu, Ying J Cancer Research Paper Background: Clear cell renal cell carcinoma (ccRCC) constitutes the commonest kidney malignancy. Immunogenic cell death (ICD) is a type of regulated cell death (RCD), which sufficiently activates adaptive immunity. However, ICD's involvement in cancer development is unclear, as well as the associations of ICD effectors with ccRCC prognosis. Methods: RNA-sequencing expression profiles of ccRCC in The Cancer Genome Atlas (TCGA) and normal samples in Gene Expression Omnibus (GEO) were comprehensively investigated. Consensus clustering analysis was employed to determine subgroup members linked to ICD-related genes. Functional enrichment analysis was utilized for the examination of TLR4's biological role, and in vitro cellular assays were utilized for further confirmation. We also used Kaplan-Meier (KM) and Cox regression analyses to assess TLR4's prognostic value. Finally, “CIBERSORT” was employed for immune score evaluation. Results: The associations of ICD effectors with ccRCC prognosis were examined based on TCGA, and 12 genes showed upregulation in ccRCC tissue specimens. Meanwhile, ccRCC cases with upregulated ICD-related genes had increased overall survival. Among these ICD-related genes, TLR4 was selected for subsequent analysis. TLR4 was upregulated in ccRCC samples and independently predicted ccRCC. TLR4 also enhanced the proliferative, migratory and invasive abilities in cultured ccRCC cells. Moreover, TLR4 had close relationships with immune checkpoints and infiltrated immune cells. ccRCC cases with elevated TLR4 expression had prolonged overall survival, suggesting a prognostic value for TLR4. Finally, a pan-cancer analysis demonstrated TLR4 had differential expression in various malignancies in comparison with normal tissue samples. Conclusions: This study revealed prognostic values for ICD-associated genes, particularly TLR4, and experimentally validated the inducing effects of TLR4 on ccRCC progression in vitro. We also demonstrated the associations of TLR4 with immune cell infiltration, providing a novel strategy for prognostic evaluation and a novel therapeutic target in ccRCC. Ivyspring International Publisher 2023-07-16 /pmc/articles/PMC10414050/ /pubmed/37576399 http://dx.doi.org/10.7150/jca.84502 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Zhang, Zhentao
Wang, Shuo
Lu, Ye
Xia, Demeng
Liu, Ying
TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma
title TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma
title_full TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma
title_fullStr TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma
title_full_unstemmed TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma
title_short TLR4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma
title_sort tlr4 predicts patient prognosis and immunotherapy efficacy in clear cell renal cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10414050/
https://www.ncbi.nlm.nih.gov/pubmed/37576399
http://dx.doi.org/10.7150/jca.84502
work_keys_str_mv AT zhangzhentao tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma
AT wangshuo tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma
AT luye tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma
AT xiademeng tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma
AT liuying tlr4predictspatientprognosisandimmunotherapyefficacyinclearcellrenalcellcarcinoma