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A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila

Classic strategies for circular RNA (circRNA) preparation always introduce large numbers of linear transcripts or extra nucleotides to the circularized product. In this study, we aimed to develop an efficient system for circRNA preparation based on a self-splicing ribozyme derived from an optimized...

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Autores principales: Cui, Jingyi, Zhang, Lanxin, Zhang, Zaifeng, Luo, Xuanmei, Liu, Ye, Li, Chang, Huang, Wei, Zou, Lihui, Yu, Xue, Xiao, Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10415121/
https://www.ncbi.nlm.nih.gov/pubmed/37378451
http://dx.doi.org/10.1093/nar/gkad554
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author Cui, Jingyi
Zhang, Lanxin
Zhang, Zaifeng
Luo, Xuanmei
Liu, Ye
Li, Chang
Huang, Wei
Zou, Lihui
Yu, Xue
Xiao, Fei
author_facet Cui, Jingyi
Zhang, Lanxin
Zhang, Zaifeng
Luo, Xuanmei
Liu, Ye
Li, Chang
Huang, Wei
Zou, Lihui
Yu, Xue
Xiao, Fei
author_sort Cui, Jingyi
collection PubMed
description Classic strategies for circular RNA (circRNA) preparation always introduce large numbers of linear transcripts or extra nucleotides to the circularized product. In this study, we aimed to develop an efficient system for circRNA preparation based on a self-splicing ribozyme derived from an optimized Tetrahymena thermophila group Ⅰ intron. The target RNA sequence was inserted downstream of the ribozyme and a complementary antisense region was added upstream of the ribozyme to assist cyclization. Then, we compared the circularization efficiency of ribozyme or flanking intronic complementary sequence (ICS)-mediated methods through the DNMT1, CDR1as, FOXO3, and HIPK3 genes and found that the efficiency of our system was remarkably higher than that of flanking ICS-mediated method. Consequently, the circularized products mediated by ribozyme are not introduced with additional nucleotides. Meanwhile, the overexpressed circFOXO3 maintained its biological functions in regulating cell proliferation, migration, and apoptosis. Finally, a ribozyme-based circular mRNA expression system was demonstrated with a split green fluorescent protein (GFP) using an optimized Coxsackievirus B3 (CVB3) internal ribosome entry site (IRES) sequence, and this system achieved successful translation of circularized mRNA. Therefore, this novel, convenient, and rapid engineering RNA circularization system can be applied for the functional study and large-scale preparation of circular RNA in the future.
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spelling pubmed-104151212023-08-12 A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila Cui, Jingyi Zhang, Lanxin Zhang, Zaifeng Luo, Xuanmei Liu, Ye Li, Chang Huang, Wei Zou, Lihui Yu, Xue Xiao, Fei Nucleic Acids Res Methods Classic strategies for circular RNA (circRNA) preparation always introduce large numbers of linear transcripts or extra nucleotides to the circularized product. In this study, we aimed to develop an efficient system for circRNA preparation based on a self-splicing ribozyme derived from an optimized Tetrahymena thermophila group Ⅰ intron. The target RNA sequence was inserted downstream of the ribozyme and a complementary antisense region was added upstream of the ribozyme to assist cyclization. Then, we compared the circularization efficiency of ribozyme or flanking intronic complementary sequence (ICS)-mediated methods through the DNMT1, CDR1as, FOXO3, and HIPK3 genes and found that the efficiency of our system was remarkably higher than that of flanking ICS-mediated method. Consequently, the circularized products mediated by ribozyme are not introduced with additional nucleotides. Meanwhile, the overexpressed circFOXO3 maintained its biological functions in regulating cell proliferation, migration, and apoptosis. Finally, a ribozyme-based circular mRNA expression system was demonstrated with a split green fluorescent protein (GFP) using an optimized Coxsackievirus B3 (CVB3) internal ribosome entry site (IRES) sequence, and this system achieved successful translation of circularized mRNA. Therefore, this novel, convenient, and rapid engineering RNA circularization system can be applied for the functional study and large-scale preparation of circular RNA in the future. Oxford University Press 2023-06-28 /pmc/articles/PMC10415121/ /pubmed/37378451 http://dx.doi.org/10.1093/nar/gkad554 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methods
Cui, Jingyi
Zhang, Lanxin
Zhang, Zaifeng
Luo, Xuanmei
Liu, Ye
Li, Chang
Huang, Wei
Zou, Lihui
Yu, Xue
Xiao, Fei
A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila
title A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila
title_full A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila
title_fullStr A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila
title_full_unstemmed A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila
title_short A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila
title_sort precise and efficient circular rna synthesis system based on a ribozyme derived from tetrahymena thermophila
topic Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10415121/
https://www.ncbi.nlm.nih.gov/pubmed/37378451
http://dx.doi.org/10.1093/nar/gkad554
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