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A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila
Classic strategies for circular RNA (circRNA) preparation always introduce large numbers of linear transcripts or extra nucleotides to the circularized product. In this study, we aimed to develop an efficient system for circRNA preparation based on a self-splicing ribozyme derived from an optimized...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10415121/ https://www.ncbi.nlm.nih.gov/pubmed/37378451 http://dx.doi.org/10.1093/nar/gkad554 |
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author | Cui, Jingyi Zhang, Lanxin Zhang, Zaifeng Luo, Xuanmei Liu, Ye Li, Chang Huang, Wei Zou, Lihui Yu, Xue Xiao, Fei |
author_facet | Cui, Jingyi Zhang, Lanxin Zhang, Zaifeng Luo, Xuanmei Liu, Ye Li, Chang Huang, Wei Zou, Lihui Yu, Xue Xiao, Fei |
author_sort | Cui, Jingyi |
collection | PubMed |
description | Classic strategies for circular RNA (circRNA) preparation always introduce large numbers of linear transcripts or extra nucleotides to the circularized product. In this study, we aimed to develop an efficient system for circRNA preparation based on a self-splicing ribozyme derived from an optimized Tetrahymena thermophila group Ⅰ intron. The target RNA sequence was inserted downstream of the ribozyme and a complementary antisense region was added upstream of the ribozyme to assist cyclization. Then, we compared the circularization efficiency of ribozyme or flanking intronic complementary sequence (ICS)-mediated methods through the DNMT1, CDR1as, FOXO3, and HIPK3 genes and found that the efficiency of our system was remarkably higher than that of flanking ICS-mediated method. Consequently, the circularized products mediated by ribozyme are not introduced with additional nucleotides. Meanwhile, the overexpressed circFOXO3 maintained its biological functions in regulating cell proliferation, migration, and apoptosis. Finally, a ribozyme-based circular mRNA expression system was demonstrated with a split green fluorescent protein (GFP) using an optimized Coxsackievirus B3 (CVB3) internal ribosome entry site (IRES) sequence, and this system achieved successful translation of circularized mRNA. Therefore, this novel, convenient, and rapid engineering RNA circularization system can be applied for the functional study and large-scale preparation of circular RNA in the future. |
format | Online Article Text |
id | pubmed-10415121 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-104151212023-08-12 A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila Cui, Jingyi Zhang, Lanxin Zhang, Zaifeng Luo, Xuanmei Liu, Ye Li, Chang Huang, Wei Zou, Lihui Yu, Xue Xiao, Fei Nucleic Acids Res Methods Classic strategies for circular RNA (circRNA) preparation always introduce large numbers of linear transcripts or extra nucleotides to the circularized product. In this study, we aimed to develop an efficient system for circRNA preparation based on a self-splicing ribozyme derived from an optimized Tetrahymena thermophila group Ⅰ intron. The target RNA sequence was inserted downstream of the ribozyme and a complementary antisense region was added upstream of the ribozyme to assist cyclization. Then, we compared the circularization efficiency of ribozyme or flanking intronic complementary sequence (ICS)-mediated methods through the DNMT1, CDR1as, FOXO3, and HIPK3 genes and found that the efficiency of our system was remarkably higher than that of flanking ICS-mediated method. Consequently, the circularized products mediated by ribozyme are not introduced with additional nucleotides. Meanwhile, the overexpressed circFOXO3 maintained its biological functions in regulating cell proliferation, migration, and apoptosis. Finally, a ribozyme-based circular mRNA expression system was demonstrated with a split green fluorescent protein (GFP) using an optimized Coxsackievirus B3 (CVB3) internal ribosome entry site (IRES) sequence, and this system achieved successful translation of circularized mRNA. Therefore, this novel, convenient, and rapid engineering RNA circularization system can be applied for the functional study and large-scale preparation of circular RNA in the future. Oxford University Press 2023-06-28 /pmc/articles/PMC10415121/ /pubmed/37378451 http://dx.doi.org/10.1093/nar/gkad554 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Methods Cui, Jingyi Zhang, Lanxin Zhang, Zaifeng Luo, Xuanmei Liu, Ye Li, Chang Huang, Wei Zou, Lihui Yu, Xue Xiao, Fei A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila |
title | A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila |
title_full | A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila |
title_fullStr | A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila |
title_full_unstemmed | A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila |
title_short | A precise and efficient circular RNA synthesis system based on a ribozyme derived from Tetrahymena thermophila |
title_sort | precise and efficient circular rna synthesis system based on a ribozyme derived from tetrahymena thermophila |
topic | Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10415121/ https://www.ncbi.nlm.nih.gov/pubmed/37378451 http://dx.doi.org/10.1093/nar/gkad554 |
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