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Comprehensive analysis of the role of a four-gene signature based on EMT in the prognosis, immunity, and treatment of lung squamous cell carcinoma

Epithelial-mesenchymal transition (EMT), a biological process through which epithelial cells transform into mesenchymal cells, contributes to tumor progression and metastasis. However, a comprehensive analysis of the role of EMT-related genes in Lung squamous cell carcinoma (LUSC) is still lacking....

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Autores principales: Li, Feng, Wang, Hui, Wang, Can, Li, Yun, Song, Jing-Yan, Fan, Ke-Yi, Li, Chao, Ma, Quan-Lin, Yu, Qi, Zhang, Shuang-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10415548/
https://www.ncbi.nlm.nih.gov/pubmed/37462692
http://dx.doi.org/10.18632/aging.204878
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author Li, Feng
Wang, Hui
Wang, Can
Li, Yun
Song, Jing-Yan
Fan, Ke-Yi
Li, Chao
Ma, Quan-Lin
Yu, Qi
Zhang, Shuang-Ping
author_facet Li, Feng
Wang, Hui
Wang, Can
Li, Yun
Song, Jing-Yan
Fan, Ke-Yi
Li, Chao
Ma, Quan-Lin
Yu, Qi
Zhang, Shuang-Ping
author_sort Li, Feng
collection PubMed
description Epithelial-mesenchymal transition (EMT), a biological process through which epithelial cells transform into mesenchymal cells, contributes to tumor progression and metastasis. However, a comprehensive analysis of the role of EMT-related genes in Lung squamous cell carcinoma (LUSC) is still lacking. In this study, data were downloaded from available databases, including The Cancer Genome Atlas (TCGA) database and the Gene Expression Omnibus (GEO) database. The association between differentially expressed EMT-related genes (EMT-RDGs) and LUSC prognosis, drug sensitivity, mutation, and immunity was analyzed using bioinformatics methods. In the results, Lasso and univariate Cox regression analyses identified four EMT-RDGs that were differentially expressed, and used to establish a prognostic model capable of distinguishing between high- and low-risk groups. Then, prognostic factors were identified by multivariate Cox regression analysis and used to construct a nomogram. The high-risk group had a significantly poorer prognosis than the low-risk group. The tumor immune environment was significantly different between the two groups, with the low-risk group exhibiting a better response to immunotherapy. In addition, the half-maximal inhibitory concentration prediction indicating that the constructed model could effectively predict sensitivity to chemotherapy. This study provides new reference for further exploration of new clinical therapeutic strategies for LUSC.
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spelling pubmed-104155482023-08-12 Comprehensive analysis of the role of a four-gene signature based on EMT in the prognosis, immunity, and treatment of lung squamous cell carcinoma Li, Feng Wang, Hui Wang, Can Li, Yun Song, Jing-Yan Fan, Ke-Yi Li, Chao Ma, Quan-Lin Yu, Qi Zhang, Shuang-Ping Aging (Albany NY) Research Paper Epithelial-mesenchymal transition (EMT), a biological process through which epithelial cells transform into mesenchymal cells, contributes to tumor progression and metastasis. However, a comprehensive analysis of the role of EMT-related genes in Lung squamous cell carcinoma (LUSC) is still lacking. In this study, data were downloaded from available databases, including The Cancer Genome Atlas (TCGA) database and the Gene Expression Omnibus (GEO) database. The association between differentially expressed EMT-related genes (EMT-RDGs) and LUSC prognosis, drug sensitivity, mutation, and immunity was analyzed using bioinformatics methods. In the results, Lasso and univariate Cox regression analyses identified four EMT-RDGs that were differentially expressed, and used to establish a prognostic model capable of distinguishing between high- and low-risk groups. Then, prognostic factors were identified by multivariate Cox regression analysis and used to construct a nomogram. The high-risk group had a significantly poorer prognosis than the low-risk group. The tumor immune environment was significantly different between the two groups, with the low-risk group exhibiting a better response to immunotherapy. In addition, the half-maximal inhibitory concentration prediction indicating that the constructed model could effectively predict sensitivity to chemotherapy. This study provides new reference for further exploration of new clinical therapeutic strategies for LUSC. Impact Journals 2023-07-17 /pmc/articles/PMC10415548/ /pubmed/37462692 http://dx.doi.org/10.18632/aging.204878 Text en Copyright: © 2023 Li et al. https://creativecommons.org/licenses/by/3.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Li, Feng
Wang, Hui
Wang, Can
Li, Yun
Song, Jing-Yan
Fan, Ke-Yi
Li, Chao
Ma, Quan-Lin
Yu, Qi
Zhang, Shuang-Ping
Comprehensive analysis of the role of a four-gene signature based on EMT in the prognosis, immunity, and treatment of lung squamous cell carcinoma
title Comprehensive analysis of the role of a four-gene signature based on EMT in the prognosis, immunity, and treatment of lung squamous cell carcinoma
title_full Comprehensive analysis of the role of a four-gene signature based on EMT in the prognosis, immunity, and treatment of lung squamous cell carcinoma
title_fullStr Comprehensive analysis of the role of a four-gene signature based on EMT in the prognosis, immunity, and treatment of lung squamous cell carcinoma
title_full_unstemmed Comprehensive analysis of the role of a four-gene signature based on EMT in the prognosis, immunity, and treatment of lung squamous cell carcinoma
title_short Comprehensive analysis of the role of a four-gene signature based on EMT in the prognosis, immunity, and treatment of lung squamous cell carcinoma
title_sort comprehensive analysis of the role of a four-gene signature based on emt in the prognosis, immunity, and treatment of lung squamous cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10415548/
https://www.ncbi.nlm.nih.gov/pubmed/37462692
http://dx.doi.org/10.18632/aging.204878
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