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Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer
BACKGROUND: The most common cause of death for colon cancer patients is liver metastasis. METHODS: All the data enrolled in this study were downloaded from two public databases, The Cancer Genome Atlas Program, the TCGA-COAD project and Gene Expression Omnibus, GSE41258 project. All the analysis was...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10416425/ https://www.ncbi.nlm.nih.gov/pubmed/37563546 http://dx.doi.org/10.1186/s12876-023-02896-z |
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author | Zhou, Lei Zhang, Yan Wei, Ming Du, Kangming Lin, Jing Wei, Lihong |
author_facet | Zhou, Lei Zhang, Yan Wei, Ming Du, Kangming Lin, Jing Wei, Lihong |
author_sort | Zhou, Lei |
collection | PubMed |
description | BACKGROUND: The most common cause of death for colon cancer patients is liver metastasis. METHODS: All the data enrolled in this study were downloaded from two public databases, The Cancer Genome Atlas Program, the TCGA-COAD project and Gene Expression Omnibus, GSE41258 project. All the analysis was performed in R software. RESULTS: In our study, we systematically explored the molecules involved in the liver metastasis process of colon cancer. The biological role of these molecules was identified through the GO and KEGG analysis. Moreover, we identified that the molecules SERPINA3, SERPINA1, MMP3, ALDH1A3, PBK and CXCL14 were the independent factors for patients survival. The CXCL14 was selected for further analysis for its most significant P value. Single-cell analysis showed that the CXCL14 was mainly expressed in the fibroblasts. Meanwhile, the biological role of fibroblasts in the colon cancer microenvironment was investigated. Further, the clinical role of CXCL14 in colon cancer was also explored. The result showed that the CXCL14 is a protective factor against colon cancer independent of other clinical parameters like age, gender, clinical stage, and TNM classifications. Then, biological enrichment analysis indicated that the CXCL14 is predominantly involved in the activating of the WNT/β/catenin pathway, pancreas beta cells, peroxisome and bile acid metabolism. Immune infiltration analysis showed that for the patients with high CXCL14 levels, the plasma B cells, CD8 + T cells, neutrophil and NK cells might infiltrate more, in contrast to B cells, monocyte and macrophages. Furthermore, we found that the patients with low CXCL14 expression might be more sensitive to etoposide, rapamycin and sunitinib. CONCLUSIONS: Our result could improve the understanding of the liver metastasis process in colon cancer. Also, CXCL14 was identified as an underlying therapeutic target for colon cancer. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12876-023-02896-z. |
format | Online Article Text |
id | pubmed-10416425 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-104164252023-08-12 Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer Zhou, Lei Zhang, Yan Wei, Ming Du, Kangming Lin, Jing Wei, Lihong BMC Gastroenterol Research BACKGROUND: The most common cause of death for colon cancer patients is liver metastasis. METHODS: All the data enrolled in this study were downloaded from two public databases, The Cancer Genome Atlas Program, the TCGA-COAD project and Gene Expression Omnibus, GSE41258 project. All the analysis was performed in R software. RESULTS: In our study, we systematically explored the molecules involved in the liver metastasis process of colon cancer. The biological role of these molecules was identified through the GO and KEGG analysis. Moreover, we identified that the molecules SERPINA3, SERPINA1, MMP3, ALDH1A3, PBK and CXCL14 were the independent factors for patients survival. The CXCL14 was selected for further analysis for its most significant P value. Single-cell analysis showed that the CXCL14 was mainly expressed in the fibroblasts. Meanwhile, the biological role of fibroblasts in the colon cancer microenvironment was investigated. Further, the clinical role of CXCL14 in colon cancer was also explored. The result showed that the CXCL14 is a protective factor against colon cancer independent of other clinical parameters like age, gender, clinical stage, and TNM classifications. Then, biological enrichment analysis indicated that the CXCL14 is predominantly involved in the activating of the WNT/β/catenin pathway, pancreas beta cells, peroxisome and bile acid metabolism. Immune infiltration analysis showed that for the patients with high CXCL14 levels, the plasma B cells, CD8 + T cells, neutrophil and NK cells might infiltrate more, in contrast to B cells, monocyte and macrophages. Furthermore, we found that the patients with low CXCL14 expression might be more sensitive to etoposide, rapamycin and sunitinib. CONCLUSIONS: Our result could improve the understanding of the liver metastasis process in colon cancer. Also, CXCL14 was identified as an underlying therapeutic target for colon cancer. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12876-023-02896-z. BioMed Central 2023-08-10 /pmc/articles/PMC10416425/ /pubmed/37563546 http://dx.doi.org/10.1186/s12876-023-02896-z Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Zhou, Lei Zhang, Yan Wei, Ming Du, Kangming Lin, Jing Wei, Lihong Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer |
title | Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer |
title_full | Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer |
title_fullStr | Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer |
title_full_unstemmed | Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer |
title_short | Comprehensive analysis of CXCL14 uncovers its role during liver metastasis in colon cancer |
title_sort | comprehensive analysis of cxcl14 uncovers its role during liver metastasis in colon cancer |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10416425/ https://www.ncbi.nlm.nih.gov/pubmed/37563546 http://dx.doi.org/10.1186/s12876-023-02896-z |
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