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The genetic polymorphisms of immune‐related genes contribute to the susceptibility and survival of lymphoma
BACKGROUND: Though immunological abnormalities have been proven involved in the pathogenesis of lymphoma, the underlying mechanism remains unclear. METHODS: We investigated 25 single nucleotide polymorphisms (SNPs) of 21 immune‐related genes and explored their roles in lymphoma. The genotyping assay...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10417154/ https://www.ncbi.nlm.nih.gov/pubmed/37329186 http://dx.doi.org/10.1002/cam4.6131 |
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author | Gu, Chaoyang Can, Can Liu, Jinting Wei, Yihong Yang, Xinyu Guo, Xiaodong Wang, Ruiqing Jia, Wenbo Liu, Wancheng Ma, Daoxin |
author_facet | Gu, Chaoyang Can, Can Liu, Jinting Wei, Yihong Yang, Xinyu Guo, Xiaodong Wang, Ruiqing Jia, Wenbo Liu, Wancheng Ma, Daoxin |
author_sort | Gu, Chaoyang |
collection | PubMed |
description | BACKGROUND: Though immunological abnormalities have been proven involved in the pathogenesis of lymphoma, the underlying mechanism remains unclear. METHODS: We investigated 25 single nucleotide polymorphisms (SNPs) of 21 immune‐related genes and explored their roles in lymphoma. The genotyping assay of the selected SNPs was used by the Massarray platform. Logistic regression and Cox proportional hazards models were used to analyze the associations of SNPs and the susceptibility of lymphoma or clinical characteristics of lymphoma patients. In addition, Least Absolute Shrinkage and Selection Operator regression was used to further analyze the relationships with the survival of lymphoma patients and candidate SNPs, and the significant difference between genotypes was verified by the expression of RNA. RESULTS: By comparing 245 lymphoma patients with 213 healthy controls, we found eight important SNPs related to the susceptibility of lymphoma, which were involved in JAK–STAT, NF‐κB and other functional pathways. We further analyzed the relationships between SNPs and clinical characteristics. Our results showed that both IL6R (rs2228145) and STAT5B (rs6503691) significantly contributed to the Ann Arbor stages of lymphoma. And the STAT3 (rs744166), IL2 (rs2069762), IL10 (rs1800871), and PARP1 (rs907187) manifested a significant relationship with the peripheral blood counts in lymphoma patients. More importantly, the IFNG (rs2069718) and IL12A (rs6887695) were associated with the overall survival (OS) of lymphoma patients remarkably, and the adverse effects of GC genotypes could not be offset by Bonferroni correction for multiple comparison in rs6887695 especially. Moreover, we determined that the mRNA expression levels of IFNG and IL12A were significantly decreased in patients with shorter‐OS genotypes. CONCLUSIONS: We used multiple methods of analysis to predict the correlations between lymphoma susceptibility, clinical characteristics or OS with SNPs. Our findings reveal that immune‐related genetic polymorphisms contribute to the prognosis and treatment of lymphoma, which may serve as promising predictive targets. |
format | Online Article Text |
id | pubmed-10417154 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-104171542023-08-12 The genetic polymorphisms of immune‐related genes contribute to the susceptibility and survival of lymphoma Gu, Chaoyang Can, Can Liu, Jinting Wei, Yihong Yang, Xinyu Guo, Xiaodong Wang, Ruiqing Jia, Wenbo Liu, Wancheng Ma, Daoxin Cancer Med RESEARCH ARTICLES BACKGROUND: Though immunological abnormalities have been proven involved in the pathogenesis of lymphoma, the underlying mechanism remains unclear. METHODS: We investigated 25 single nucleotide polymorphisms (SNPs) of 21 immune‐related genes and explored their roles in lymphoma. The genotyping assay of the selected SNPs was used by the Massarray platform. Logistic regression and Cox proportional hazards models were used to analyze the associations of SNPs and the susceptibility of lymphoma or clinical characteristics of lymphoma patients. In addition, Least Absolute Shrinkage and Selection Operator regression was used to further analyze the relationships with the survival of lymphoma patients and candidate SNPs, and the significant difference between genotypes was verified by the expression of RNA. RESULTS: By comparing 245 lymphoma patients with 213 healthy controls, we found eight important SNPs related to the susceptibility of lymphoma, which were involved in JAK–STAT, NF‐κB and other functional pathways. We further analyzed the relationships between SNPs and clinical characteristics. Our results showed that both IL6R (rs2228145) and STAT5B (rs6503691) significantly contributed to the Ann Arbor stages of lymphoma. And the STAT3 (rs744166), IL2 (rs2069762), IL10 (rs1800871), and PARP1 (rs907187) manifested a significant relationship with the peripheral blood counts in lymphoma patients. More importantly, the IFNG (rs2069718) and IL12A (rs6887695) were associated with the overall survival (OS) of lymphoma patients remarkably, and the adverse effects of GC genotypes could not be offset by Bonferroni correction for multiple comparison in rs6887695 especially. Moreover, we determined that the mRNA expression levels of IFNG and IL12A were significantly decreased in patients with shorter‐OS genotypes. CONCLUSIONS: We used multiple methods of analysis to predict the correlations between lymphoma susceptibility, clinical characteristics or OS with SNPs. Our findings reveal that immune‐related genetic polymorphisms contribute to the prognosis and treatment of lymphoma, which may serve as promising predictive targets. John Wiley and Sons Inc. 2023-06-16 /pmc/articles/PMC10417154/ /pubmed/37329186 http://dx.doi.org/10.1002/cam4.6131 Text en © 2023 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | RESEARCH ARTICLES Gu, Chaoyang Can, Can Liu, Jinting Wei, Yihong Yang, Xinyu Guo, Xiaodong Wang, Ruiqing Jia, Wenbo Liu, Wancheng Ma, Daoxin The genetic polymorphisms of immune‐related genes contribute to the susceptibility and survival of lymphoma |
title | The genetic polymorphisms of immune‐related genes contribute to the susceptibility and survival of lymphoma |
title_full | The genetic polymorphisms of immune‐related genes contribute to the susceptibility and survival of lymphoma |
title_fullStr | The genetic polymorphisms of immune‐related genes contribute to the susceptibility and survival of lymphoma |
title_full_unstemmed | The genetic polymorphisms of immune‐related genes contribute to the susceptibility and survival of lymphoma |
title_short | The genetic polymorphisms of immune‐related genes contribute to the susceptibility and survival of lymphoma |
title_sort | genetic polymorphisms of immune‐related genes contribute to the susceptibility and survival of lymphoma |
topic | RESEARCH ARTICLES |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10417154/ https://www.ncbi.nlm.nih.gov/pubmed/37329186 http://dx.doi.org/10.1002/cam4.6131 |
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