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A Coarse-to-Fine Fusion Network for Small Liver Tumor Detection and Segmentation: A Real-World Study

Liver tumor semantic segmentation is a crucial task in medical image analysis that requires multiple MRI modalities. This paper proposes a novel coarse-to-fine fusion segmentation approach to detect and segment small liver tumors of various sizes. To enhance the segmentation accuracy of small liver...

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Autores principales: Wu, Shu, Yu, Hang, Li, Cuiping, Zheng, Rencheng, Xia, Xueqin, Wang, Chengyan, Wang, He
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10417427/
https://www.ncbi.nlm.nih.gov/pubmed/37568868
http://dx.doi.org/10.3390/diagnostics13152504
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author Wu, Shu
Yu, Hang
Li, Cuiping
Zheng, Rencheng
Xia, Xueqin
Wang, Chengyan
Wang, He
author_facet Wu, Shu
Yu, Hang
Li, Cuiping
Zheng, Rencheng
Xia, Xueqin
Wang, Chengyan
Wang, He
author_sort Wu, Shu
collection PubMed
description Liver tumor semantic segmentation is a crucial task in medical image analysis that requires multiple MRI modalities. This paper proposes a novel coarse-to-fine fusion segmentation approach to detect and segment small liver tumors of various sizes. To enhance the segmentation accuracy of small liver tumors, the method incorporates a detection module and a CSR (convolution-SE-residual) module, which includes a convolution block, an SE (squeeze and excitation) module, and a residual module for fine segmentation. The proposed method demonstrates superior performance compared to conventional single-stage end-to-end networks. A private liver MRI dataset comprising 218 patients with a total of 3605 tumors, including 3273 tumors smaller than 3.0 cm, were collected for the proposed method. There are five types of liver tumors identified in this dataset: hepatocellular carcinoma (HCC); metastases of the liver; cholangiocarcinoma (ICC); hepatic cyst; and liver hemangioma. The results indicate that the proposed method outperforms the single segmentation networks 3D UNet and nnU-Net as well as the fusion networks of 3D UNet and nnU-Net with nnDetection. The proposed architecture was evaluated on a test set of 44 images, with an average Dice similarity coefficient (DSC) and recall of 86.9% and 86.7%, respectively, which is a 1% improvement compared to the comparison method. More importantly, compared to existing methods, our proposed approach demonstrates state-of-the-art performance in segmenting small objects with sizes smaller than 10 mm, achieving a Dice score of 85.3% and a malignancy detection rate of 87.5%.
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spelling pubmed-104174272023-08-12 A Coarse-to-Fine Fusion Network for Small Liver Tumor Detection and Segmentation: A Real-World Study Wu, Shu Yu, Hang Li, Cuiping Zheng, Rencheng Xia, Xueqin Wang, Chengyan Wang, He Diagnostics (Basel) Article Liver tumor semantic segmentation is a crucial task in medical image analysis that requires multiple MRI modalities. This paper proposes a novel coarse-to-fine fusion segmentation approach to detect and segment small liver tumors of various sizes. To enhance the segmentation accuracy of small liver tumors, the method incorporates a detection module and a CSR (convolution-SE-residual) module, which includes a convolution block, an SE (squeeze and excitation) module, and a residual module for fine segmentation. The proposed method demonstrates superior performance compared to conventional single-stage end-to-end networks. A private liver MRI dataset comprising 218 patients with a total of 3605 tumors, including 3273 tumors smaller than 3.0 cm, were collected for the proposed method. There are five types of liver tumors identified in this dataset: hepatocellular carcinoma (HCC); metastases of the liver; cholangiocarcinoma (ICC); hepatic cyst; and liver hemangioma. The results indicate that the proposed method outperforms the single segmentation networks 3D UNet and nnU-Net as well as the fusion networks of 3D UNet and nnU-Net with nnDetection. The proposed architecture was evaluated on a test set of 44 images, with an average Dice similarity coefficient (DSC) and recall of 86.9% and 86.7%, respectively, which is a 1% improvement compared to the comparison method. More importantly, compared to existing methods, our proposed approach demonstrates state-of-the-art performance in segmenting small objects with sizes smaller than 10 mm, achieving a Dice score of 85.3% and a malignancy detection rate of 87.5%. MDPI 2023-07-27 /pmc/articles/PMC10417427/ /pubmed/37568868 http://dx.doi.org/10.3390/diagnostics13152504 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Wu, Shu
Yu, Hang
Li, Cuiping
Zheng, Rencheng
Xia, Xueqin
Wang, Chengyan
Wang, He
A Coarse-to-Fine Fusion Network for Small Liver Tumor Detection and Segmentation: A Real-World Study
title A Coarse-to-Fine Fusion Network for Small Liver Tumor Detection and Segmentation: A Real-World Study
title_full A Coarse-to-Fine Fusion Network for Small Liver Tumor Detection and Segmentation: A Real-World Study
title_fullStr A Coarse-to-Fine Fusion Network for Small Liver Tumor Detection and Segmentation: A Real-World Study
title_full_unstemmed A Coarse-to-Fine Fusion Network for Small Liver Tumor Detection and Segmentation: A Real-World Study
title_short A Coarse-to-Fine Fusion Network for Small Liver Tumor Detection and Segmentation: A Real-World Study
title_sort coarse-to-fine fusion network for small liver tumor detection and segmentation: a real-world study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10417427/
https://www.ncbi.nlm.nih.gov/pubmed/37568868
http://dx.doi.org/10.3390/diagnostics13152504
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