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A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
MicrobeMASST, a taxonomically-informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to the...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Journal Experts
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10418563/ https://www.ncbi.nlm.nih.gov/pubmed/37577622 http://dx.doi.org/10.21203/rs.3.rs-3189768/v1 |
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author | Zuffa, Simone Schmid, Robin Bauermeister, Anelize Gomes, Paulo Wender P. Caraballo-Rodriguez, Andres M. Abiead, Yasin El Aron, Allegra T. Gentry, Emily C. Zemlin, Jasmine Meehan, Michael J. Avalon, Nicole E. Cichewicz, Robert H. Buzun, Ekaterina Terrazas, Marvic Carrillo Hsu, Chia-Yun Oles, Renee Ayala, Adriana Vasquez Zhao, Jiaqi Chu, Hiutung Kuijpers, Mirte C. M. Jackrel, Sara L. Tugizimana, Fidele Nephali, Lerato Pertunia Dubery, Ian A. Madala, Ntakadzeni Edwin Moreira, Eduarda Antunes Costa-Lotufo, Leticia Veras Lopes, Norberto Peporine Rezende-Teixeira, Paula Jimenez, Paula C. Rimal, Bipin Patterson, Andrew D. Traxler, Matthew F. de Cassia Pessotti, Rita Alvarado-Villalobos, Daniel Tamayo-Castillo, Giselle Chaverri, Priscila Escudero-Leyva, Efrain Quiros-Guerrero, Luis-Manuel Bory, Alexandre Jean Joubert, Juliette Rutz, Adriano Wolfender, Jean-Luc Allard, Pierre-Marie Sichert, Andreas Pontrelli, Sammy Pullman, Benjamin S Bandeira, Nuno Gerwick, William H. Gindro, Katia Massana-Codina, Josep Wagner, Berenike C. Forchhammer, Karl Petras, Daniel Aiosa, Nicole Garg, Neha Liebeke, Manuel Bourceau, Patric Kang, Kyo Bin Gadhavi, Henna de Carvalho, Luiz Pedro Sorio dos Santos, Mariana Silva Pérez-Lorente, Alicia Isabel Molina-Santiago, Carlos Romero, Diego Franke, Raimo Brönstrup, Mark de León, Arturo Vera Ponce Pope, Phillip Byron Rosa, Sabina Leanti La Barbera, Giorgia La Roager, Henrik M. Laursen, Martin Frederik Hammerle, Fabian Siewert, Bianka Peintner, Ursula Licona-Cassani, Cuauhtemoc Rodriguez-Orduña, Lorena Rampler, Evelyn Hildebrand, Felina Koellensperger, Gunda Schoeny, Harald Hohenwallner, Katharina Panzenboeck, Lisa Gregor, Rachel O’Neill, Ellis Charles Roxborough, Eve Tallulah Odoi, Jane Bale, Nicole J. Ding, Su Sinninghe Damsté, Jaap S. Guan, Xueli Li Cui, Jerry J. Ju, Kou-San Silva, Denise Brentan Silva, Fernanda Motta Ribeiro da Silva, Gilvan Ferreira Koolen, Hector H. F. Grundmann, Carlismari Clement, Jason A. Mohimani, Hosein Broders, Kirk McPhail, Kerry L. Ober-Singleton, Sidnee E. Rath, Christopher M. McDonald, Daniel Knight, Rob Wang, Mingxun Dorrestein, Pieter C. |
author_facet | Zuffa, Simone Schmid, Robin Bauermeister, Anelize Gomes, Paulo Wender P. Caraballo-Rodriguez, Andres M. Abiead, Yasin El Aron, Allegra T. Gentry, Emily C. Zemlin, Jasmine Meehan, Michael J. Avalon, Nicole E. Cichewicz, Robert H. Buzun, Ekaterina Terrazas, Marvic Carrillo Hsu, Chia-Yun Oles, Renee Ayala, Adriana Vasquez Zhao, Jiaqi Chu, Hiutung Kuijpers, Mirte C. M. Jackrel, Sara L. Tugizimana, Fidele Nephali, Lerato Pertunia Dubery, Ian A. Madala, Ntakadzeni Edwin Moreira, Eduarda Antunes Costa-Lotufo, Leticia Veras Lopes, Norberto Peporine Rezende-Teixeira, Paula Jimenez, Paula C. Rimal, Bipin Patterson, Andrew D. Traxler, Matthew F. de Cassia Pessotti, Rita Alvarado-Villalobos, Daniel Tamayo-Castillo, Giselle Chaverri, Priscila Escudero-Leyva, Efrain Quiros-Guerrero, Luis-Manuel Bory, Alexandre Jean Joubert, Juliette Rutz, Adriano Wolfender, Jean-Luc Allard, Pierre-Marie Sichert, Andreas Pontrelli, Sammy Pullman, Benjamin S Bandeira, Nuno Gerwick, William H. Gindro, Katia Massana-Codina, Josep Wagner, Berenike C. Forchhammer, Karl Petras, Daniel Aiosa, Nicole Garg, Neha Liebeke, Manuel Bourceau, Patric Kang, Kyo Bin Gadhavi, Henna de Carvalho, Luiz Pedro Sorio dos Santos, Mariana Silva Pérez-Lorente, Alicia Isabel Molina-Santiago, Carlos Romero, Diego Franke, Raimo Brönstrup, Mark de León, Arturo Vera Ponce Pope, Phillip Byron Rosa, Sabina Leanti La Barbera, Giorgia La Roager, Henrik M. Laursen, Martin Frederik Hammerle, Fabian Siewert, Bianka Peintner, Ursula Licona-Cassani, Cuauhtemoc Rodriguez-Orduña, Lorena Rampler, Evelyn Hildebrand, Felina Koellensperger, Gunda Schoeny, Harald Hohenwallner, Katharina Panzenboeck, Lisa Gregor, Rachel O’Neill, Ellis Charles Roxborough, Eve Tallulah Odoi, Jane Bale, Nicole J. Ding, Su Sinninghe Damsté, Jaap S. Guan, Xueli Li Cui, Jerry J. Ju, Kou-San Silva, Denise Brentan Silva, Fernanda Motta Ribeiro da Silva, Gilvan Ferreira Koolen, Hector H. F. Grundmann, Carlismari Clement, Jason A. Mohimani, Hosein Broders, Kirk McPhail, Kerry L. Ober-Singleton, Sidnee E. Rath, Christopher M. McDonald, Daniel Knight, Rob Wang, Mingxun Dorrestein, Pieter C. |
author_sort | Zuffa, Simone |
collection | PubMed |
description | MicrobeMASST, a taxonomically-informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbial-derived metabolites and relative producers, without a priori knowledge, will vastly enhance the understanding of microorganisms’ role in ecology and human health. |
format | Online Article Text |
id | pubmed-10418563 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Journal Experts |
record_format | MEDLINE/PubMed |
spelling | pubmed-104185632023-08-12 A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data Zuffa, Simone Schmid, Robin Bauermeister, Anelize Gomes, Paulo Wender P. Caraballo-Rodriguez, Andres M. Abiead, Yasin El Aron, Allegra T. Gentry, Emily C. Zemlin, Jasmine Meehan, Michael J. Avalon, Nicole E. Cichewicz, Robert H. Buzun, Ekaterina Terrazas, Marvic Carrillo Hsu, Chia-Yun Oles, Renee Ayala, Adriana Vasquez Zhao, Jiaqi Chu, Hiutung Kuijpers, Mirte C. M. Jackrel, Sara L. Tugizimana, Fidele Nephali, Lerato Pertunia Dubery, Ian A. Madala, Ntakadzeni Edwin Moreira, Eduarda Antunes Costa-Lotufo, Leticia Veras Lopes, Norberto Peporine Rezende-Teixeira, Paula Jimenez, Paula C. Rimal, Bipin Patterson, Andrew D. Traxler, Matthew F. de Cassia Pessotti, Rita Alvarado-Villalobos, Daniel Tamayo-Castillo, Giselle Chaverri, Priscila Escudero-Leyva, Efrain Quiros-Guerrero, Luis-Manuel Bory, Alexandre Jean Joubert, Juliette Rutz, Adriano Wolfender, Jean-Luc Allard, Pierre-Marie Sichert, Andreas Pontrelli, Sammy Pullman, Benjamin S Bandeira, Nuno Gerwick, William H. Gindro, Katia Massana-Codina, Josep Wagner, Berenike C. Forchhammer, Karl Petras, Daniel Aiosa, Nicole Garg, Neha Liebeke, Manuel Bourceau, Patric Kang, Kyo Bin Gadhavi, Henna de Carvalho, Luiz Pedro Sorio dos Santos, Mariana Silva Pérez-Lorente, Alicia Isabel Molina-Santiago, Carlos Romero, Diego Franke, Raimo Brönstrup, Mark de León, Arturo Vera Ponce Pope, Phillip Byron Rosa, Sabina Leanti La Barbera, Giorgia La Roager, Henrik M. Laursen, Martin Frederik Hammerle, Fabian Siewert, Bianka Peintner, Ursula Licona-Cassani, Cuauhtemoc Rodriguez-Orduña, Lorena Rampler, Evelyn Hildebrand, Felina Koellensperger, Gunda Schoeny, Harald Hohenwallner, Katharina Panzenboeck, Lisa Gregor, Rachel O’Neill, Ellis Charles Roxborough, Eve Tallulah Odoi, Jane Bale, Nicole J. Ding, Su Sinninghe Damsté, Jaap S. Guan, Xueli Li Cui, Jerry J. Ju, Kou-San Silva, Denise Brentan Silva, Fernanda Motta Ribeiro da Silva, Gilvan Ferreira Koolen, Hector H. F. Grundmann, Carlismari Clement, Jason A. Mohimani, Hosein Broders, Kirk McPhail, Kerry L. Ober-Singleton, Sidnee E. Rath, Christopher M. McDonald, Daniel Knight, Rob Wang, Mingxun Dorrestein, Pieter C. Res Sq Article MicrobeMASST, a taxonomically-informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbial-derived metabolites and relative producers, without a priori knowledge, will vastly enhance the understanding of microorganisms’ role in ecology and human health. American Journal Experts 2023-08-03 /pmc/articles/PMC10418563/ /pubmed/37577622 http://dx.doi.org/10.21203/rs.3.rs-3189768/v1 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Zuffa, Simone Schmid, Robin Bauermeister, Anelize Gomes, Paulo Wender P. Caraballo-Rodriguez, Andres M. Abiead, Yasin El Aron, Allegra T. Gentry, Emily C. Zemlin, Jasmine Meehan, Michael J. Avalon, Nicole E. Cichewicz, Robert H. Buzun, Ekaterina Terrazas, Marvic Carrillo Hsu, Chia-Yun Oles, Renee Ayala, Adriana Vasquez Zhao, Jiaqi Chu, Hiutung Kuijpers, Mirte C. M. Jackrel, Sara L. Tugizimana, Fidele Nephali, Lerato Pertunia Dubery, Ian A. Madala, Ntakadzeni Edwin Moreira, Eduarda Antunes Costa-Lotufo, Leticia Veras Lopes, Norberto Peporine Rezende-Teixeira, Paula Jimenez, Paula C. Rimal, Bipin Patterson, Andrew D. Traxler, Matthew F. de Cassia Pessotti, Rita Alvarado-Villalobos, Daniel Tamayo-Castillo, Giselle Chaverri, Priscila Escudero-Leyva, Efrain Quiros-Guerrero, Luis-Manuel Bory, Alexandre Jean Joubert, Juliette Rutz, Adriano Wolfender, Jean-Luc Allard, Pierre-Marie Sichert, Andreas Pontrelli, Sammy Pullman, Benjamin S Bandeira, Nuno Gerwick, William H. Gindro, Katia Massana-Codina, Josep Wagner, Berenike C. Forchhammer, Karl Petras, Daniel Aiosa, Nicole Garg, Neha Liebeke, Manuel Bourceau, Patric Kang, Kyo Bin Gadhavi, Henna de Carvalho, Luiz Pedro Sorio dos Santos, Mariana Silva Pérez-Lorente, Alicia Isabel Molina-Santiago, Carlos Romero, Diego Franke, Raimo Brönstrup, Mark de León, Arturo Vera Ponce Pope, Phillip Byron Rosa, Sabina Leanti La Barbera, Giorgia La Roager, Henrik M. Laursen, Martin Frederik Hammerle, Fabian Siewert, Bianka Peintner, Ursula Licona-Cassani, Cuauhtemoc Rodriguez-Orduña, Lorena Rampler, Evelyn Hildebrand, Felina Koellensperger, Gunda Schoeny, Harald Hohenwallner, Katharina Panzenboeck, Lisa Gregor, Rachel O’Neill, Ellis Charles Roxborough, Eve Tallulah Odoi, Jane Bale, Nicole J. Ding, Su Sinninghe Damsté, Jaap S. Guan, Xueli Li Cui, Jerry J. Ju, Kou-San Silva, Denise Brentan Silva, Fernanda Motta Ribeiro da Silva, Gilvan Ferreira Koolen, Hector H. F. Grundmann, Carlismari Clement, Jason A. Mohimani, Hosein Broders, Kirk McPhail, Kerry L. Ober-Singleton, Sidnee E. Rath, Christopher M. McDonald, Daniel Knight, Rob Wang, Mingxun Dorrestein, Pieter C. A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data |
title | A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data |
title_full | A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data |
title_fullStr | A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data |
title_full_unstemmed | A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data |
title_short | A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data |
title_sort | taxonomically-informed mass spectrometry search tool for microbial metabolomics data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10418563/ https://www.ncbi.nlm.nih.gov/pubmed/37577622 http://dx.doi.org/10.21203/rs.3.rs-3189768/v1 |
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