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A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data

MicrobeMASST, a taxonomically-informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to the...

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Autores principales: Zuffa, Simone, Schmid, Robin, Bauermeister, Anelize, Gomes, Paulo Wender P., Caraballo-Rodriguez, Andres M., Abiead, Yasin El, Aron, Allegra T., Gentry, Emily C., Zemlin, Jasmine, Meehan, Michael J., Avalon, Nicole E., Cichewicz, Robert H., Buzun, Ekaterina, Terrazas, Marvic Carrillo, Hsu, Chia-Yun, Oles, Renee, Ayala, Adriana Vasquez, Zhao, Jiaqi, Chu, Hiutung, Kuijpers, Mirte C. M., Jackrel, Sara L., Tugizimana, Fidele, Nephali, Lerato Pertunia, Dubery, Ian A., Madala, Ntakadzeni Edwin, Moreira, Eduarda Antunes, Costa-Lotufo, Leticia Veras, Lopes, Norberto Peporine, Rezende-Teixeira, Paula, Jimenez, Paula C., Rimal, Bipin, Patterson, Andrew D., Traxler, Matthew F., de Cassia Pessotti, Rita, Alvarado-Villalobos, Daniel, Tamayo-Castillo, Giselle, Chaverri, Priscila, Escudero-Leyva, Efrain, Quiros-Guerrero, Luis-Manuel, Bory, Alexandre Jean, Joubert, Juliette, Rutz, Adriano, Wolfender, Jean-Luc, Allard, Pierre-Marie, Sichert, Andreas, Pontrelli, Sammy, Pullman, Benjamin S, Bandeira, Nuno, Gerwick, William H., Gindro, Katia, Massana-Codina, Josep, Wagner, Berenike C., Forchhammer, Karl, Petras, Daniel, Aiosa, Nicole, Garg, Neha, Liebeke, Manuel, Bourceau, Patric, Kang, Kyo Bin, Gadhavi, Henna, de Carvalho, Luiz Pedro Sorio, dos Santos, Mariana Silva, Pérez-Lorente, Alicia Isabel, Molina-Santiago, Carlos, Romero, Diego, Franke, Raimo, Brönstrup, Mark, de León, Arturo Vera Ponce, Pope, Phillip Byron, Rosa, Sabina Leanti La, Barbera, Giorgia La, Roager, Henrik M., Laursen, Martin Frederik, Hammerle, Fabian, Siewert, Bianka, Peintner, Ursula, Licona-Cassani, Cuauhtemoc, Rodriguez-Orduña, Lorena, Rampler, Evelyn, Hildebrand, Felina, Koellensperger, Gunda, Schoeny, Harald, Hohenwallner, Katharina, Panzenboeck, Lisa, Gregor, Rachel, O’Neill, Ellis Charles, Roxborough, Eve Tallulah, Odoi, Jane, Bale, Nicole J., Ding, Su, Sinninghe Damsté, Jaap S., Guan, Xueli Li, Cui, Jerry J., Ju, Kou-San, Silva, Denise Brentan, Silva, Fernanda Motta Ribeiro, da Silva, Gilvan Ferreira, Koolen, Hector H. F., Grundmann, Carlismari, Clement, Jason A., Mohimani, Hosein, Broders, Kirk, McPhail, Kerry L., Ober-Singleton, Sidnee E., Rath, Christopher M., McDonald, Daniel, Knight, Rob, Wang, Mingxun, Dorrestein, Pieter C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Journal Experts 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10418563/
https://www.ncbi.nlm.nih.gov/pubmed/37577622
http://dx.doi.org/10.21203/rs.3.rs-3189768/v1
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author Zuffa, Simone
Schmid, Robin
Bauermeister, Anelize
Gomes, Paulo Wender P.
Caraballo-Rodriguez, Andres M.
Abiead, Yasin El
Aron, Allegra T.
Gentry, Emily C.
Zemlin, Jasmine
Meehan, Michael J.
Avalon, Nicole E.
Cichewicz, Robert H.
Buzun, Ekaterina
Terrazas, Marvic Carrillo
Hsu, Chia-Yun
Oles, Renee
Ayala, Adriana Vasquez
Zhao, Jiaqi
Chu, Hiutung
Kuijpers, Mirte C. M.
Jackrel, Sara L.
Tugizimana, Fidele
Nephali, Lerato Pertunia
Dubery, Ian A.
Madala, Ntakadzeni Edwin
Moreira, Eduarda Antunes
Costa-Lotufo, Leticia Veras
Lopes, Norberto Peporine
Rezende-Teixeira, Paula
Jimenez, Paula C.
Rimal, Bipin
Patterson, Andrew D.
Traxler, Matthew F.
de Cassia Pessotti, Rita
Alvarado-Villalobos, Daniel
Tamayo-Castillo, Giselle
Chaverri, Priscila
Escudero-Leyva, Efrain
Quiros-Guerrero, Luis-Manuel
Bory, Alexandre Jean
Joubert, Juliette
Rutz, Adriano
Wolfender, Jean-Luc
Allard, Pierre-Marie
Sichert, Andreas
Pontrelli, Sammy
Pullman, Benjamin S
Bandeira, Nuno
Gerwick, William H.
Gindro, Katia
Massana-Codina, Josep
Wagner, Berenike C.
Forchhammer, Karl
Petras, Daniel
Aiosa, Nicole
Garg, Neha
Liebeke, Manuel
Bourceau, Patric
Kang, Kyo Bin
Gadhavi, Henna
de Carvalho, Luiz Pedro Sorio
dos Santos, Mariana Silva
Pérez-Lorente, Alicia Isabel
Molina-Santiago, Carlos
Romero, Diego
Franke, Raimo
Brönstrup, Mark
de León, Arturo Vera Ponce
Pope, Phillip Byron
Rosa, Sabina Leanti La
Barbera, Giorgia La
Roager, Henrik M.
Laursen, Martin Frederik
Hammerle, Fabian
Siewert, Bianka
Peintner, Ursula
Licona-Cassani, Cuauhtemoc
Rodriguez-Orduña, Lorena
Rampler, Evelyn
Hildebrand, Felina
Koellensperger, Gunda
Schoeny, Harald
Hohenwallner, Katharina
Panzenboeck, Lisa
Gregor, Rachel
O’Neill, Ellis Charles
Roxborough, Eve Tallulah
Odoi, Jane
Bale, Nicole J.
Ding, Su
Sinninghe Damsté, Jaap S.
Guan, Xueli Li
Cui, Jerry J.
Ju, Kou-San
Silva, Denise Brentan
Silva, Fernanda Motta Ribeiro
da Silva, Gilvan Ferreira
Koolen, Hector H. F.
Grundmann, Carlismari
Clement, Jason A.
Mohimani, Hosein
Broders, Kirk
McPhail, Kerry L.
Ober-Singleton, Sidnee E.
Rath, Christopher M.
McDonald, Daniel
Knight, Rob
Wang, Mingxun
Dorrestein, Pieter C.
author_facet Zuffa, Simone
Schmid, Robin
Bauermeister, Anelize
Gomes, Paulo Wender P.
Caraballo-Rodriguez, Andres M.
Abiead, Yasin El
Aron, Allegra T.
Gentry, Emily C.
Zemlin, Jasmine
Meehan, Michael J.
Avalon, Nicole E.
Cichewicz, Robert H.
Buzun, Ekaterina
Terrazas, Marvic Carrillo
Hsu, Chia-Yun
Oles, Renee
Ayala, Adriana Vasquez
Zhao, Jiaqi
Chu, Hiutung
Kuijpers, Mirte C. M.
Jackrel, Sara L.
Tugizimana, Fidele
Nephali, Lerato Pertunia
Dubery, Ian A.
Madala, Ntakadzeni Edwin
Moreira, Eduarda Antunes
Costa-Lotufo, Leticia Veras
Lopes, Norberto Peporine
Rezende-Teixeira, Paula
Jimenez, Paula C.
Rimal, Bipin
Patterson, Andrew D.
Traxler, Matthew F.
de Cassia Pessotti, Rita
Alvarado-Villalobos, Daniel
Tamayo-Castillo, Giselle
Chaverri, Priscila
Escudero-Leyva, Efrain
Quiros-Guerrero, Luis-Manuel
Bory, Alexandre Jean
Joubert, Juliette
Rutz, Adriano
Wolfender, Jean-Luc
Allard, Pierre-Marie
Sichert, Andreas
Pontrelli, Sammy
Pullman, Benjamin S
Bandeira, Nuno
Gerwick, William H.
Gindro, Katia
Massana-Codina, Josep
Wagner, Berenike C.
Forchhammer, Karl
Petras, Daniel
Aiosa, Nicole
Garg, Neha
Liebeke, Manuel
Bourceau, Patric
Kang, Kyo Bin
Gadhavi, Henna
de Carvalho, Luiz Pedro Sorio
dos Santos, Mariana Silva
Pérez-Lorente, Alicia Isabel
Molina-Santiago, Carlos
Romero, Diego
Franke, Raimo
Brönstrup, Mark
de León, Arturo Vera Ponce
Pope, Phillip Byron
Rosa, Sabina Leanti La
Barbera, Giorgia La
Roager, Henrik M.
Laursen, Martin Frederik
Hammerle, Fabian
Siewert, Bianka
Peintner, Ursula
Licona-Cassani, Cuauhtemoc
Rodriguez-Orduña, Lorena
Rampler, Evelyn
Hildebrand, Felina
Koellensperger, Gunda
Schoeny, Harald
Hohenwallner, Katharina
Panzenboeck, Lisa
Gregor, Rachel
O’Neill, Ellis Charles
Roxborough, Eve Tallulah
Odoi, Jane
Bale, Nicole J.
Ding, Su
Sinninghe Damsté, Jaap S.
Guan, Xueli Li
Cui, Jerry J.
Ju, Kou-San
Silva, Denise Brentan
Silva, Fernanda Motta Ribeiro
da Silva, Gilvan Ferreira
Koolen, Hector H. F.
Grundmann, Carlismari
Clement, Jason A.
Mohimani, Hosein
Broders, Kirk
McPhail, Kerry L.
Ober-Singleton, Sidnee E.
Rath, Christopher M.
McDonald, Daniel
Knight, Rob
Wang, Mingxun
Dorrestein, Pieter C.
author_sort Zuffa, Simone
collection PubMed
description MicrobeMASST, a taxonomically-informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbial-derived metabolites and relative producers, without a priori knowledge, will vastly enhance the understanding of microorganisms’ role in ecology and human health.
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spelling pubmed-104185632023-08-12 A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data Zuffa, Simone Schmid, Robin Bauermeister, Anelize Gomes, Paulo Wender P. Caraballo-Rodriguez, Andres M. Abiead, Yasin El Aron, Allegra T. Gentry, Emily C. Zemlin, Jasmine Meehan, Michael J. Avalon, Nicole E. Cichewicz, Robert H. Buzun, Ekaterina Terrazas, Marvic Carrillo Hsu, Chia-Yun Oles, Renee Ayala, Adriana Vasquez Zhao, Jiaqi Chu, Hiutung Kuijpers, Mirte C. M. Jackrel, Sara L. Tugizimana, Fidele Nephali, Lerato Pertunia Dubery, Ian A. Madala, Ntakadzeni Edwin Moreira, Eduarda Antunes Costa-Lotufo, Leticia Veras Lopes, Norberto Peporine Rezende-Teixeira, Paula Jimenez, Paula C. Rimal, Bipin Patterson, Andrew D. Traxler, Matthew F. de Cassia Pessotti, Rita Alvarado-Villalobos, Daniel Tamayo-Castillo, Giselle Chaverri, Priscila Escudero-Leyva, Efrain Quiros-Guerrero, Luis-Manuel Bory, Alexandre Jean Joubert, Juliette Rutz, Adriano Wolfender, Jean-Luc Allard, Pierre-Marie Sichert, Andreas Pontrelli, Sammy Pullman, Benjamin S Bandeira, Nuno Gerwick, William H. Gindro, Katia Massana-Codina, Josep Wagner, Berenike C. Forchhammer, Karl Petras, Daniel Aiosa, Nicole Garg, Neha Liebeke, Manuel Bourceau, Patric Kang, Kyo Bin Gadhavi, Henna de Carvalho, Luiz Pedro Sorio dos Santos, Mariana Silva Pérez-Lorente, Alicia Isabel Molina-Santiago, Carlos Romero, Diego Franke, Raimo Brönstrup, Mark de León, Arturo Vera Ponce Pope, Phillip Byron Rosa, Sabina Leanti La Barbera, Giorgia La Roager, Henrik M. Laursen, Martin Frederik Hammerle, Fabian Siewert, Bianka Peintner, Ursula Licona-Cassani, Cuauhtemoc Rodriguez-Orduña, Lorena Rampler, Evelyn Hildebrand, Felina Koellensperger, Gunda Schoeny, Harald Hohenwallner, Katharina Panzenboeck, Lisa Gregor, Rachel O’Neill, Ellis Charles Roxborough, Eve Tallulah Odoi, Jane Bale, Nicole J. Ding, Su Sinninghe Damsté, Jaap S. Guan, Xueli Li Cui, Jerry J. Ju, Kou-San Silva, Denise Brentan Silva, Fernanda Motta Ribeiro da Silva, Gilvan Ferreira Koolen, Hector H. F. Grundmann, Carlismari Clement, Jason A. Mohimani, Hosein Broders, Kirk McPhail, Kerry L. Ober-Singleton, Sidnee E. Rath, Christopher M. McDonald, Daniel Knight, Rob Wang, Mingxun Dorrestein, Pieter C. Res Sq Article MicrobeMASST, a taxonomically-informed mass spectrometry (MS) search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging a curated database of >60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns. Identification of microbial-derived metabolites and relative producers, without a priori knowledge, will vastly enhance the understanding of microorganisms’ role in ecology and human health. American Journal Experts 2023-08-03 /pmc/articles/PMC10418563/ /pubmed/37577622 http://dx.doi.org/10.21203/rs.3.rs-3189768/v1 Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Zuffa, Simone
Schmid, Robin
Bauermeister, Anelize
Gomes, Paulo Wender P.
Caraballo-Rodriguez, Andres M.
Abiead, Yasin El
Aron, Allegra T.
Gentry, Emily C.
Zemlin, Jasmine
Meehan, Michael J.
Avalon, Nicole E.
Cichewicz, Robert H.
Buzun, Ekaterina
Terrazas, Marvic Carrillo
Hsu, Chia-Yun
Oles, Renee
Ayala, Adriana Vasquez
Zhao, Jiaqi
Chu, Hiutung
Kuijpers, Mirte C. M.
Jackrel, Sara L.
Tugizimana, Fidele
Nephali, Lerato Pertunia
Dubery, Ian A.
Madala, Ntakadzeni Edwin
Moreira, Eduarda Antunes
Costa-Lotufo, Leticia Veras
Lopes, Norberto Peporine
Rezende-Teixeira, Paula
Jimenez, Paula C.
Rimal, Bipin
Patterson, Andrew D.
Traxler, Matthew F.
de Cassia Pessotti, Rita
Alvarado-Villalobos, Daniel
Tamayo-Castillo, Giselle
Chaverri, Priscila
Escudero-Leyva, Efrain
Quiros-Guerrero, Luis-Manuel
Bory, Alexandre Jean
Joubert, Juliette
Rutz, Adriano
Wolfender, Jean-Luc
Allard, Pierre-Marie
Sichert, Andreas
Pontrelli, Sammy
Pullman, Benjamin S
Bandeira, Nuno
Gerwick, William H.
Gindro, Katia
Massana-Codina, Josep
Wagner, Berenike C.
Forchhammer, Karl
Petras, Daniel
Aiosa, Nicole
Garg, Neha
Liebeke, Manuel
Bourceau, Patric
Kang, Kyo Bin
Gadhavi, Henna
de Carvalho, Luiz Pedro Sorio
dos Santos, Mariana Silva
Pérez-Lorente, Alicia Isabel
Molina-Santiago, Carlos
Romero, Diego
Franke, Raimo
Brönstrup, Mark
de León, Arturo Vera Ponce
Pope, Phillip Byron
Rosa, Sabina Leanti La
Barbera, Giorgia La
Roager, Henrik M.
Laursen, Martin Frederik
Hammerle, Fabian
Siewert, Bianka
Peintner, Ursula
Licona-Cassani, Cuauhtemoc
Rodriguez-Orduña, Lorena
Rampler, Evelyn
Hildebrand, Felina
Koellensperger, Gunda
Schoeny, Harald
Hohenwallner, Katharina
Panzenboeck, Lisa
Gregor, Rachel
O’Neill, Ellis Charles
Roxborough, Eve Tallulah
Odoi, Jane
Bale, Nicole J.
Ding, Su
Sinninghe Damsté, Jaap S.
Guan, Xueli Li
Cui, Jerry J.
Ju, Kou-San
Silva, Denise Brentan
Silva, Fernanda Motta Ribeiro
da Silva, Gilvan Ferreira
Koolen, Hector H. F.
Grundmann, Carlismari
Clement, Jason A.
Mohimani, Hosein
Broders, Kirk
McPhail, Kerry L.
Ober-Singleton, Sidnee E.
Rath, Christopher M.
McDonald, Daniel
Knight, Rob
Wang, Mingxun
Dorrestein, Pieter C.
A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
title A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
title_full A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
title_fullStr A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
title_full_unstemmed A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
title_short A Taxonomically-informed Mass Spectrometry Search Tool for Microbial Metabolomics Data
title_sort taxonomically-informed mass spectrometry search tool for microbial metabolomics data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10418563/
https://www.ncbi.nlm.nih.gov/pubmed/37577622
http://dx.doi.org/10.21203/rs.3.rs-3189768/v1
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