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Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological Features

Prostate cancer (PCa) is one of the most prevalent cancers in men, yet its pathogenic pathways remain poorly understood. Transcriptomics and high-throughput sequencing can help uncover cancer diagnostic targets and understand biological circuits. Using prostate adenocarcinoma (PRAD) datasets of vari...

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Autores principales: Tram, Van Thi Ngoc, Khoa Ta, Hoang Dang, Anuraga, Gangga, Dung, Phan Vu Thuy, Xuan, Do Thi Minh, Dey, Sanskriti, Wang, Chih-Yang, Liu, Yen-Nien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10418609/
https://www.ncbi.nlm.nih.gov/pubmed/37569304
http://dx.doi.org/10.3390/ijms241511930
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author Tram, Van Thi Ngoc
Khoa Ta, Hoang Dang
Anuraga, Gangga
Dung, Phan Vu Thuy
Xuan, Do Thi Minh
Dey, Sanskriti
Wang, Chih-Yang
Liu, Yen-Nien
author_facet Tram, Van Thi Ngoc
Khoa Ta, Hoang Dang
Anuraga, Gangga
Dung, Phan Vu Thuy
Xuan, Do Thi Minh
Dey, Sanskriti
Wang, Chih-Yang
Liu, Yen-Nien
author_sort Tram, Van Thi Ngoc
collection PubMed
description Prostate cancer (PCa) is one of the most prevalent cancers in men, yet its pathogenic pathways remain poorly understood. Transcriptomics and high-throughput sequencing can help uncover cancer diagnostic targets and understand biological circuits. Using prostate adenocarcinoma (PRAD) datasets of various web-based applications (GEPIA, UALCAN, cBioPortal, SR Plot, hTFtarget, Genome Browser, and MetaCore), we found that upregulated dysbindin domain-containing 1 (DBNDD1) expression in primary prostate tumors was strongly correlated with pathways involving the cell cycle, mitotic in KEGG, WIKI, and REACTOME database, and transcription factor-binding sites with the DBNDD1 gene in prostate samples. DBNDD1 gene expression was influenced by sample type, cancer stage, and promoter methylation levels of different cancers, such as PRAD, liver hepatocellular carcinoma (LIHC), and lung adenocarcinoma (LUAD). Regulation of glycogen synthase kinase (GSK)-3β in bipolar disorder and ATP/ITP/GTP/XTP/TTP/CTP/UTP metabolic pathways was closely correlated with the DBNDD1 gene and its co-expressed genes in PCa. DBNDD1 gene expression was positively associated with immune infiltration of B cells, Myeloid-derived suppressor cell (MDSC), M2 macrophages, andneutrophil, whereas negatively correlated with CD8(+) T cells, T follicular helper cells, M1 macrophages, and NK cells in PCa. These findings suggest that DBNDD1 may serve as a viable prognostic marker not only for early-stage PCa but also for immunotherapies.
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spelling pubmed-104186092023-08-12 Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological Features Tram, Van Thi Ngoc Khoa Ta, Hoang Dang Anuraga, Gangga Dung, Phan Vu Thuy Xuan, Do Thi Minh Dey, Sanskriti Wang, Chih-Yang Liu, Yen-Nien Int J Mol Sci Article Prostate cancer (PCa) is one of the most prevalent cancers in men, yet its pathogenic pathways remain poorly understood. Transcriptomics and high-throughput sequencing can help uncover cancer diagnostic targets and understand biological circuits. Using prostate adenocarcinoma (PRAD) datasets of various web-based applications (GEPIA, UALCAN, cBioPortal, SR Plot, hTFtarget, Genome Browser, and MetaCore), we found that upregulated dysbindin domain-containing 1 (DBNDD1) expression in primary prostate tumors was strongly correlated with pathways involving the cell cycle, mitotic in KEGG, WIKI, and REACTOME database, and transcription factor-binding sites with the DBNDD1 gene in prostate samples. DBNDD1 gene expression was influenced by sample type, cancer stage, and promoter methylation levels of different cancers, such as PRAD, liver hepatocellular carcinoma (LIHC), and lung adenocarcinoma (LUAD). Regulation of glycogen synthase kinase (GSK)-3β in bipolar disorder and ATP/ITP/GTP/XTP/TTP/CTP/UTP metabolic pathways was closely correlated with the DBNDD1 gene and its co-expressed genes in PCa. DBNDD1 gene expression was positively associated with immune infiltration of B cells, Myeloid-derived suppressor cell (MDSC), M2 macrophages, andneutrophil, whereas negatively correlated with CD8(+) T cells, T follicular helper cells, M1 macrophages, and NK cells in PCa. These findings suggest that DBNDD1 may serve as a viable prognostic marker not only for early-stage PCa but also for immunotherapies. MDPI 2023-07-25 /pmc/articles/PMC10418609/ /pubmed/37569304 http://dx.doi.org/10.3390/ijms241511930 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Tram, Van Thi Ngoc
Khoa Ta, Hoang Dang
Anuraga, Gangga
Dung, Phan Vu Thuy
Xuan, Do Thi Minh
Dey, Sanskriti
Wang, Chih-Yang
Liu, Yen-Nien
Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological Features
title Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological Features
title_full Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological Features
title_fullStr Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological Features
title_full_unstemmed Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological Features
title_short Dysbindin Domain-Containing 1 in Prostate Cancer: New Insights into Bioinformatic Validation of Molecular and Immunological Features
title_sort dysbindin domain-containing 1 in prostate cancer: new insights into bioinformatic validation of molecular and immunological features
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10418609/
https://www.ncbi.nlm.nih.gov/pubmed/37569304
http://dx.doi.org/10.3390/ijms241511930
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